Table 1.
Similarity between technical replicates and number of variants. The similarity between technical replicates on average is 88%, range 0–100%. Number of total, common and private SNVs. Common SNVs: SNVs detected in both replicas of the same DNA samples; Private SNVs: SNVs detected only in one of the two DNA sequences of the same DNA
| Sample | Common | A + B | Total | Similarity (%) |
|---|---|---|---|---|
| DCIS-017 | 0 | 1 | 1 | 0 |
| DCIS-020-B3 | 19 | 8 | 27 | 70.4 |
| DCIS-020-B6 | 57 | 11 | 68 | 83.8 |
| DCIS-028-K12 | 4 | 0 | 4 | 100 |
| DCIS-029-D5 | 20 | 6 | 26 | 76.9 |
| DCIS-029-D8 | 11 | 2 | 13 | 84.6 |
| DCIS-050 | 8 | 1 | 9 | 88.9 |
| DCIS-064 | 28 | 2 | 30 | 93.3 |
| DCIS-080 | 7 | 0 | 7 | 100 |
| DCIS-094-B11 | 45 | 4 | 49 | 91.8 |
| DCIS-094-B7 | 35 | 1 | 36 | 97.2 |
| DCIS-122 | 3 | 0 | 3 | 100 |
| DCIS-135 | 9 | 2 | 11 | 81.8 |
| DCIS-163 | 1 | 0 | 1 | 100 |
| DCIS-164 | 44 | 2 | 46 | 95.7 |
| DCIS-168-C4 | 55 | 2 | 57 | 96.5 |
| DCIS-168-C8 | 41 | 0 | 41 | 100 |
| DCIS-171 | NA | NA | NA | NA |
| DCIS-178 | 8.0 | 0 | 8 | 100 |
| DCIS-211 | 12 | 0 | 12 | 100 |
| DCIS-213 | NA | NA | NA | NA |
| DCIS-222-B10 | 6 | 0 | 6 | 100 |
| DCIS-222-B6 | 1.0 | 0 | 1 | 100 |
| DCIS-225-A16 | 9 | 5 | 14 | 64.3 |
| DCIS-225-A6 | NA | NA | NA | NA |
| DCIS-227 | 6 | 0 | 6 | 100 |
| DCIS-250 | NA | NA | NA | NA |
| DCIS-267 | 33 | 5 | 38 | 86.8 |
| Average | 19.3 | 2.2 | 21.4 | 88.0 |
| SD | 18.2 | 2.9 | 19.8 | 21.4 |