Table 1 |.
Examples of the functional mechanisms of biomolecular condensates in biological processes
Functional mechanism | Biological process | In vitro | In vivo |
---|---|---|---|
Enhancement or suppression of biochemical reactions | |||
Enhanced activity through concentrating enzymes and substrates | Carbon fixation | 38,40 | 41 |
Innate immune signaling | 47 | 47 | |
RNA interference | 50 | ||
Microtubule nucleation/spindle assembly | 54–57,199 | 54,199 | |
Cell-cell adhesion | 59 | 58,59 | |
Autophagy | 106 | 106 | |
RNA degradation | 200 | 200 | |
RNA splicing | 201 | 201 | |
Pre-mRNA processing | 202,203 | ||
Inhibition of activity through sequestration | Transcriptional regulation | 60,61 | |
Cell fate determination under stress | 204 | ||
Modulation of activity through exclusion of factors | Adaptive immune signaling | 63 | 63 |
Synaptic transmission | 65 | ||
Factors beyond concentration that modulate enzyme activity | Signal transduction | 69 | |
Actin cytoskeleton | 68 | 68 | |
Post-transcriptional regulation | 70 | ||
Bacterial cell polarization | 205 | ||
Membrane protein trafficking | 72 | ||
Modulation of macromolecule folding | Nuclear protein homeostasis | 27 | |
RNA homeostasis | 28,29,76 | 28,29,76,77 | |
Vectoral organization of biochemistry | Ribosome biogenesis | 31,81 | 30,80 |
Transgenerational RNAi inheritance | 82 | ||
Establishing mesoscale architecture | Synaptic transmission | 65,84,85,185 | 85 |
DNA damage response | 32,92,96,97 | 32,92,96,97 | |
DNA replication | 98 | ||
Autophagy | 102,104–106 | 102,104–106 | |
Centriole biogenesis | 206 | 206 | |
Facilitating specific cellular localization | Localized neuronal translation | 34 | 34 |
Heterochromatin maintenance | 120 | 120 | |
Germ cell fate maintenance | 207 | 33 | |
Buffering stochastic cellular noise | Signal transduction | 35 | |
Sensing and switching | Heat shock response | 19,128 | 19,128 |
Nutrient stress response | 20,130,131 | 20,130,131 | |
Protein homeostasis | 208 | ||
Unknown or debated functions | Transcription | 149,150,152,156,209,210 | 149–156,209,210 |
Chromatin | 6,117,119,188,211 | 119,188,211 | |
Viral replication/evasion of host innate immunity | 212–214 | ||
Protein degradation | 215 | 215 | |
Cell motility | 216 | ||
Sorting RNA to distinct granules | 12 | 12 | |
Nucleocytoplasmic transport | 217 |