Table 4.
Results from assessing combining P-value meta-analysis methods using breast cancer study
| Analysis | # Significant Genes | ACCURACY | F1SCORE | TPR |
|---|---|---|---|---|
| Individual-analysis | ||||
| GSE37139 | 5142 | 0.5294 | 0.4783 | 0.4231 |
| GSE7904 | 16 253 | 0.4648 | 0.4722 | 0.4474 |
| GSE36295 | 6448 | 0.5800 | 0.5116 | 0.4231 |
| GSE3744 | 10 240 | 0.5323 | 0.4314 | 0.3438 |
| Meta-analysis | ||||
| AWFisher | 10 087 | 0.4783 | 0.5862 | 0.7391 |
| Fisher | 7182 | 0.4783 | 0.5556 | 0.6522 |
| MaxP | 2995 | 0.5870 | 0.5128 | 0.4348 |
| MinP | 6926 | 0.4348 | 0.5000 | 0.5652 |
| rOP | 4288 | 0.6087* | 0.5714 | 0.5217 |
| Stouffer | 6101 | 0.5000 | 0.5660 | 0.6522 |
| Weighted Z-score | 12 815* | 0.5000 | 0.6462* | 0.9130* |