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. 2021 Nov 9;19:241. doi: 10.1186/s12915-021-01158-2

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5. — TE family expression in midguts and ovaries from S. oryzae. A Log10 normalized counts in midguts and ovaries triplicates. Normalized counts show different proportions of transcriptionally active TE families in different TE classes. B Log10 of base mean average expression of TE families in ovaries and midguts from three biological replicates. Depicted in color only TE families which had differential expression between ovary and gut tissues (padj< 0.05, |log2FC| > 2). Most TE families are upregulated in midguts compared to ovaries. C Distribution of all significant (padj< 0.05). Log2FC depicts specifically deregulated TE classes in each tissue. LTR elements are predominantly upregulated in ovaries