Table 1.
Summary of differentially expresses genes resulting from RNA-seq comparisons of cerebellum (Cb) and fore- and mid-brain (F/M) regions between Tpp1−/− (T) and control animals (C) at different ages
Month | % of reads mapped | Mouse gene analyzed | Brain region | DEG T vs C |
DEG down T vs C |
DEG up T vs C |
---|---|---|---|---|---|---|
1* | 88.7 | 14,681 | F/M | 2 (126) | 2 (84) | 0 (42) |
Cb | 2 (255) | 2 (65) | 0 (190) | |||
2 | 87.2 | 14,081 | F/M | 139 | 25 | 114 |
Cb | 339 | 292 | 47 | |||
3 | 88.1 | 14,575 | F/M | 89 | 11 | 78 |
Cb | 154 | 31 | 123 | |||
4 | 88.3 | 14,923 | F/M | 510 | 171 | 339 |
Cb | 1550 | 553 | 1071 |
*At 1 month few DEGs genes were detected using FDR-corrected p-values; raw p-values were considered instead in the threshold (p < 0.1) only at 1-month-old (number in parenthesis)