FIG 3.

Phylogenetic analysis of captured rodents indicates that multiple rodents can be infected with SNV. A maximum likelihood tree was generated based on S, M, and L segments combined. The numbers below the branches indicate bootstrap values from 500 replicates. Chipmunk (T. minimus) (purple), common house mouse (M. musculus) (blue), and pinyon mouse (P. boylii) (orange) genomes from both sites are displayed. The tree was rooted to the Prospect Hill reference sequence. Additional reference sequences were obtained through the NCBI and combined. SNV-infected Vero E6 cells (SNV VERO) were used as positive sequencing controls. The bar represents the number of substitutions per site.