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. 2021 Nov 4;28(11):2000–2008.e4. doi: 10.1016/j.stem.2021.08.003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit anti-C-peptide Cell Signaling 4593 (RRID: AB_10691857)
Goat anti-GFP Abcam ab6673 (RRID: AB_305643)
Mouse anti-Insulin Sigma-Aldrich I2018 (RRID: AB_260137)
Rabbit anti-RFP TebuBio 600-401-379 (RRID: AB_2209751)
Rat-anti-Somatostatin Abcam ab30788 (RRID: AB_778010)
Goat anti-TdTomato Biorbyt Orb182397 (RRID: AB_2687917)
Mouse anti-Urocortin3 Phoenix Pharmaceuticals Cat# H-019-29
Alexa Fluor 488 donkey anti-mouse Thermo A-21202 (RRID: AB_141607)
Alexa Fluor 546 donkey anti-rabbit Thermo A10040 (RRID: AB_2534016)
Alexa Fluor 647 goat anti-rat Thermo A-21247 (RRID: AB_141778)
Alexa Fluor 488 goat anti-goat Thermo A-11055 (RRID: AB_2534102)

Chemicals, peptides, and recombinant proteins

Fluorescein labeled Dolichos Biflorus Agglutinin (DBA) Vector labs FL-1031
Tamoxifen Sigma T5648
Peanut oil Sigma P2144
Formalin solution, neutral buffered, 10% Sigma HT501128
Bovine Serum Albumin Sigma A7906
Trisodium citrate dihydrate Sigma S1804
Methyl salicylate Sigma M6752
Triton X-100 Sigma T9284
Sudan Black B Sigma 199664
Methanol Sigma 32213
Histo-Clear Fisher 12358637

Deposited data

scRNA-seq of islet cells from Ngn3-CreERT; R26-CAG-tdTomato mice This paper GEO: GSE138038

Experimental models: Organisms/strains

Mouse: Hnf1bTg(Hnf1b-cre/ERT2)1Jfer Solar et al., 2009 (RRID: IMSR_JAX:027681)
Mouse: (Tg)(Ins1-cre/ERT)1Lphi The Jackson Laboratory Jax: 024709 (RRID: IMSR_JAX:024709)
Mouse: Tg(Neurog3-cre/Esr1)1Dam The Jackson Laboratory Jax: 008119 (RRID: IMSR_JAX:008119)
Mouse: C57BL/6-Ins2Akita/J The Jackson Laboratory Jax: 003548 (RRID: IMSR_JAX:003548)
Mouse: tm9.1(CAG-tdTomato)Hze The Jackson Laboratory Jax: 007909 (RRID: IMSR_JAX:007909)
Mouse: Neurog3tm1(EGFP)Khk MMRRC 000344-UCD (RRID: MMRRC_000344-UCD)

Software and algorithms

StrataQuest Analysis Software Tissue Gnostics https://tissuegnostics.com/en/products/analysing-software/strataquest
Zen 2.3 Zeiss https://www.zeiss.com/microscopy/int/products/microscope-software/zen-lite.html
Imaris 8.3.1 Bitplane https://imaris.oxinst.com/packages
Cell Ranger 3.2.0 10X Genomics https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/installation
RStudio 3.6.1 RStudio https://www.rstudio.com/
Prism 7 for MacOS Graphpad https://www.graphpad.com/scientific-software/prism/
FastQC Andrews, 2010 https://www.bioinformatics.babraham.ac.uk/projects/fastqc
Cutadapt Martin, 2011 https://github.com/marcelm/cutadapt
Scater McCarthy et al., 2017 https://bioconductor.org/packages/release/bioc/html/scater.html
Seurat Satija et al., 2015 https://satijalab.org/seurat/
TSCAN Ji and Ji, 2016(Ji and Ji, 2016) https://bioconductor.org/packages/release/bioc/html/TSCAN.html
SCE (Single Cell Experiment) Amezquita et al., 2020(Amezquita et al., 2020) https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html