Antibodies |
|
Rabbit anti-C-peptide |
Cell Signaling |
4593 (RRID: AB_10691857) |
Goat anti-GFP |
Abcam |
ab6673 (RRID: AB_305643) |
Mouse anti-Insulin |
Sigma-Aldrich |
I2018 (RRID: AB_260137) |
Rabbit anti-RFP |
TebuBio |
600-401-379 (RRID: AB_2209751) |
Rat-anti-Somatostatin |
Abcam |
ab30788 (RRID: AB_778010) |
Goat anti-TdTomato |
Biorbyt |
Orb182397 (RRID: AB_2687917) |
Mouse anti-Urocortin3 |
Phoenix Pharmaceuticals |
Cat# H-019-29 |
Alexa Fluor 488 donkey anti-mouse |
Thermo |
A-21202 (RRID: AB_141607) |
Alexa Fluor 546 donkey anti-rabbit |
Thermo |
A10040 (RRID: AB_2534016) |
Alexa Fluor 647 goat anti-rat |
Thermo |
A-21247 (RRID: AB_141778) |
Alexa Fluor 488 goat anti-goat |
Thermo |
A-11055 (RRID: AB_2534102) |
|
Chemicals, peptides, and recombinant proteins |
|
Fluorescein labeled Dolichos Biflorus Agglutinin (DBA) |
Vector labs |
FL-1031 |
Tamoxifen |
Sigma |
T5648 |
Peanut oil |
Sigma |
P2144 |
Formalin solution, neutral buffered, 10% |
Sigma |
HT501128 |
Bovine Serum Albumin |
Sigma |
A7906 |
Trisodium citrate dihydrate |
Sigma |
S1804 |
Methyl salicylate |
Sigma |
M6752 |
Triton X-100 |
Sigma |
T9284 |
Sudan Black B |
Sigma |
199664 |
Methanol |
Sigma |
32213 |
Histo-Clear |
Fisher |
12358637 |
|
Deposited data |
|
scRNA-seq of islet cells from Ngn3-CreERT; R26-CAG-tdTomato mice |
This paper |
GEO: GSE138038
|
|
Experimental models: Organisms/strains |
|
Mouse: Hnf1bTg(Hnf1b-cre/ERT2)1Jfer |
Solar et al., 2009 |
(RRID: IMSR_JAX:027681) |
Mouse: (Tg)(Ins1-cre/ERT)1Lphi |
The Jackson Laboratory |
Jax: 024709 (RRID: IMSR_JAX:024709) |
Mouse: Tg(Neurog3-cre/Esr1∗)1Dam |
The Jackson Laboratory |
Jax: 008119 (RRID: IMSR_JAX:008119) |
Mouse: C57BL/6-Ins2Akita/J |
The Jackson Laboratory |
Jax: 003548 (RRID: IMSR_JAX:003548) |
Mouse: tm9.1(CAG-tdTomato)Hze |
The Jackson Laboratory |
Jax: 007909 (RRID: IMSR_JAX:007909)
|
Mouse: Neurog3tm1(EGFP)Khk |
MMRRC |
000344-UCD (RRID: MMRRC_000344-UCD) |
|
Software and algorithms |
|
StrataQuest Analysis Software |
Tissue Gnostics |
https://tissuegnostics.com/en/products/analysing-software/strataquest |
Zen 2.3 |
Zeiss |
https://www.zeiss.com/microscopy/int/products/microscope-software/zen-lite.html |
Imaris 8.3.1 |
Bitplane |
https://imaris.oxinst.com/packages |
Cell Ranger 3.2.0 |
10X Genomics |
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/installation |
RStudio 3.6.1 |
RStudio |
https://www.rstudio.com/ |
Prism 7 for MacOS |
Graphpad |
https://www.graphpad.com/scientific-software/prism/ |
FastQC |
Andrews, 2010 |
https://www.bioinformatics.babraham.ac.uk/projects/fastqc |
Cutadapt |
Martin, 2011 |
https://github.com/marcelm/cutadapt |
Scater |
McCarthy et al., 2017 |
https://bioconductor.org/packages/release/bioc/html/scater.html |
Seurat |
Satija et al., 2015 |
https://satijalab.org/seurat/ |
TSCAN |
Ji and Ji, 2016(Ji and Ji, 2016) |
https://bioconductor.org/packages/release/bioc/html/TSCAN.html |
SCE (Single Cell Experiment) |
Amezquita et al., 2020(Amezquita et al., 2020) |
https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html |