Table 3.
Details of the differentially expressed genes (DEGs)
| Gene ID | Designation | Length (bp) | log2FoldChange (PMML/PMGL) | Up/down | p value | Gene function |
|---|---|---|---|---|---|---|
| PMI_RS14830 | 2495 | 1.42386006927969 | Up | 6.96E-05 | Mat/Ecp fimbriae outer membrane usher protein | |
| PMI_RS04770 | 543 | 1.08047931271713 | Up | 0.00016 | Uridine kinase | |
| PMI_RS08220 | 603 | 1.7635152260287 | Up | 2.50E-05 | LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor | |
| PMI_RS10390 | mgtE | 1074 | 1.61430565477922 | Up | 3.82E-06 | Fimbrial chaperone protein |
| PMI_RS12550 | 699 | 1.67510731358992 | Up | 3.82E-06 | Fimbrial chaperone protein | |
| PMI_RS09675 | 861 | 1.84898299118261 | Up | 7.76E-05 | No | |
| PMI_RS14835 | 864 | 1.45666073453672 | Up | 4.40E-05 | Mat/Ecp fimbriae periplasmic chaperone | |
| PMI_RS09275 | 765 | 1.31823468916688 | Up | 0.00043 | Chaperone protein PapD | |
| PMI_RS09270 | 2487 | 1.53135272820167 | Up | 2.42E-05 | Outer membrane usher protein PapC | |
| PMI_RS17505 | 1.31232107003372 | Up | 0.000109 | XRE family transcriptional regulator, master regulator for biofilm formation | ||
| PMI_RS15440 | 1353 | 1.70558100358398 | Up | 0.00032 | No | |
| PMI_RS03790 | pyrD | 1011 | 1.10139831452801 | Up | 8.69E-05 | Type VI secretion system secreted protein Hcp |
| PMI_RS06685 | gstA | 612 | −1.51757779099496 | Down | 0.00028 | Lglutathione S-transferase |
| PMI_RS09365 | grcA | 384 | −1.7488696118053 | Down | 6.98E-05 | Autonomous glycyl radical cofactor |
| PMI_RS01070 | 1383 | −1.36339040837153 | Down | 6.35E-05 | Solute carrier family | |
| PMI_RS18490 | gpmB | 648 | −1.46649446000024 | Down | 7.08E-05 | Probable phosphoglycerate mutase |
| PMI_RS13405 | 279 | −1.90346273574243 | Down | 0.00028 | Ethanolamine utilization protein EutM | |
| PMI_RS03835 | rmf | 171 | −1.77234261558484 | Down | 0.00025 | Ribosome modulation factor |
| PMI_RS06255 | fumc | 1398 | −1.53400675009522 | Down | 0.00031 | Fumarate hydratase, class II |
| PMI_RS04910 | 243 | −1.46880616244531 | Down | 0.00036 | No | |
| PMI_RS12610 | 1071 | −1.35999327826646 | Down | 6.86E-06 | Integrase/recombinase XerC | |
| PMI_RS06750 | sodB | 579 | −1.11371491034908 | Down | 9.33E-05 | Superoxide dismutase |
| PMI_RS19020 | ssrA | 367 | −2.3513452021666 | Down | 2.07E-06 | No |
| PMI_RS14315 | pstB | 777 | −1.91031855481805 | Down | 0.00043 | Chaperone protein PapD |
| PMI_RS06815 | 240 | −1.77700473582651 | Down | 0.00015 | Murein lipoprotein | |
| PMI_RS05420 | 519 | −1.5049377019371 | Down | 1.91E-05 | Secretion system secreted protein Hcp | |
| PMI_RS05240 | ychH | 279 | −2.48872258916291 | Down | 7.89E-07 | No |
| PMI_RS14300 | pstS | 1041 | −1.88909737452914 | Down | 0.00025 | Phosphate transport system substrate-binding protein |
| PMI_RS03690 | 519 | −1.50265019782485 | Down | 8.69E-05 | Type VI secretion system secreted protein Hcp |