Figure 5.

Responses in ENV versus other respiratory infections. (A) Volcano plot of results of the contrast from the linear regression analysis of ENV infected versus all other respiratory virus infections. y-axis: -log₁₀ BH multiple testing adjusted p-values, x-axis: log₂ fold change. DEGs (absolute log-fold change > 1.5, corresponding to a log₂-fold change > 0.58; multiple testing adjusted p-value < 0.05) are colored red and the top 20 up- and down-regulated (by log-fold change) DEGs are labeled. Blue: genes with adjusted p-value < 0.05. (B) Gene expression levels of the top four most strongly up-regulated (by absolute fold-change) ENV versus all other respiratory virus specific DEGs. CNTNAP3, Contactin Associated Protein Family Member 3; CNTNAP3B, Contactin Associated Protein Family Member 3B; PI3, Peptidase Inhibitor 3; PHF24, PHD Finger Protein 24. IAV, influenza; ENV_RHV, enterovirus/rhinovirus; MPV, human metapneumovirus; other_vir, all other respiratory viruses; hlty_contr, healthy controls. (C) Expression levels of the top 50 most strongly regulated (by absolute fold-change) DEGs from the contrast of ENV infected patients versus all other respiratory infections are presented. Values were scaled by row. red: up-regulated DEGs, blue: down-regulated DEGS. IAV, influenza virus; ENV_RHV, enterovirus/rhinovirus; MPV, metapneumovirus; PaInf, parainfluenza virus; RSV, respiratory syncytial virus; AdV, adenovirus; CMV, cytomegalovirus; EBV , Epstein-Barr virus. (D) Functional analysis using GO term enrichment for the DEGs from the contrast of ENV infected versus all other respiratory virus infections. Network of top 20 up-regulated pathways and associated genes. Red: up-regulated. (E) Functional analysis using GO term enrichment for the DEGs from the contrast of ENV infected versus all other respiratory virus infections. Network of top 20 down-regulated pathways and associated genes. Green: down-regulated. NS, not significant.