Table 2.

List of DEGs for comparison of single respiratory virus infections versus controls.

Comparison	Model	DEG total	DEG up	DEG down
IAV versus hlty	model.matrix(~ 0 + vir_grp2); IAV against healthy controls	1335	937	418
ENV/RHV versus hlty	model.matrix(~ 0 + vir_grp2); ENV against healthy controls	1136	815	321
MPV versus hlty	model.matrix(~ 0 + vir_grp2); MPV against healthy controls	1691	1110	581

Number of DEG for the different contrasts between patients with respiratory infections and healthy controls. Model, model used in limma for this comparison and groups included in model. DEG, differentially expressed genes; IAV, influenza; ENV/RHV, enterovirus/rhinovirus; MPV, metapneumovirus; hlty, healthy controls.