Table 2.
Anionic lipid binding sites in 9-copy simulations
| Binding sitea |
TM1_H8 |
ICL1_TM4 |
TM3_TM4_ICL2 |
TM3_TM5 |
TM5_TM6_ICL3 |
TM6_TM7 |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A2aR stateb | I | A | AmG | I | A | AmG | I | A | AmG | I | A | AmG | I | A | AmG | I | A | AmG |
| PIP2binding sites in PIP2-containing simulations | ||||||||||||||||||
| Residence time (μs) | 1.4 | 1.6 | 20.2 | 0.6 | 1.0 | 21.3 | 0.5 | 0.5 | 27.1 | 1.5 | 3.2 | 20.4 | 0.8 | 4.9 | 8.1 | 2.4 | 12.1 | 31.3 |
| No. of PIP2 molecules | 4.4 | 2.9 | 5.4 | 2.7 | 2.1 | 3.1 | 3.0 | 3.0 | 3.3 | 3.8 | 3.6 | 5.1 | 4.2 | 5.6 | 5.1 | 3.9 | 4.1 | 3.4 |
| DOPS binding sites in PIP2-free simulations | ||||||||||||||||||
| Residence time (μs) | 0.2 | 0.7 | 1.7 | 0.2 | 0.17 | 1.2 | 0.2 | 0.2 | 3.5 | 0.06 | 0.09 | 2.9 | 0.2 | 0.2 | 2.4 | 0.2 | 0.5 | 3.0 |
| No. of DOPS molecules | 1.6 | 1.6 | 1.6 | 1.3 | 1.4 | 1.6 | 1.6 | 1.6 | 1.7 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.4 | 1.4 | 1.8 | 1.7 |
The binding sites are illustrated in Figure 6B, to which the color coding used above corresponds. Binding sites were calculated based on the interactions of head group beads.
I, inactive; A, active; AmG, active + mini Gs.