REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse anti-Tubulin β3 (Tuj1) (1:250) | Biolegend | Cat# ab801202; RRID: AB_10063408 |
Alexa Fluor® 488 AffiniPure Donkey Anti-Mouse IgG (H+L) (1:500) | Jackson ImmunoResearch Labs | Cat# 715-545-151; RRID:AB_2341099 |
Alexa Fluor® 594 AffiniPure Donkey Anti-Mouse IgG (H+L) (1:500) | Jackson ImmunoResearch Labs | Cat# 715-585-151; RRID:AB_2340855 |
Chemicals, peptides, and recombinant proteins | ||
DMEM | Fisher Scientific | Cat# 11995-040 |
DPBS | Fisher Scientific | Cat# 14190144 |
NaCl (5 M) | Fisher Scientific | Cat# 24740011 |
Tris-HCl (1 M, pH 8.0) | Fisher Scientific | Cat# 15568025 |
Ketamine | Vedco Inc. | Cat# NDC 50989 |
Xylazine | Akorn Inc. | Cat# NDC 59399 |
FBS | Fisher Scientific | Cat# MT35010CV |
Penicillin-streptomycin | Fisher Scientific | Cat# BW17602E |
Polyethylenimine (PEI) | Polysciences | Cat# 23966-1 |
Benzonase | Sigma | Cat# E1014_25kU |
Iodixanol | Fisher Scientific | Cat# NC1059560 |
Fast Green | Fisher Scientific | Cat# S25692 |
Mineral oil | Fisher Scientific | Cat# BP26291 |
N-Methyl-D-aspartic Acid (NMDA) | Millipore Sigma | Cat# 454575 |
Fluoromount-G Slide Mounting Medium | Fisher Scientific | Cat# OB100-01 |
Experimental models: Cell lines | ||
AAVpro 293T Cell Line | Takara Bio | Cat# 632273 |
Experimental models: Organisms/strains | ||
Mouse: C57BL/6J (8-week-old, male or female) | The Jackson Laboratory | Cat# JAX:000664, RRID: IMSR_JAX:000664 |
Recombinant DNA | ||
pAAV-GFP | Obtained from Dr. Kevin Park | N/A |
pAAV-EBFP | Guo et al. (2021) | N/A |
pAAV-CaMKIIα T286D | Guo et al. (2021) | N/A |
pRep-Cap | Addgene | Cat# 104963 |
pHelper | Addgene | Cat# 112867 |
Software and algorithms | ||
GraphPad Prism 9 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
ImageJ | Schindelin et al. (2012) | https://imagej.net/Fiji |
Other | ||
Confocal microscope | Zeiss | LSM 800 |
Stereomicroscope | Leica | M60 |
Motorized microscope stand | Promicra | Promicra PRO-MLS |
Beam splitter | Leica | Wild 319449 |
Microscope camera | HAYEAR | HY-3307 |
Camera adaptor | Leica | Leica 10445319 |
Observation tube | Leica-Wild | Wild 411576 |
Observation tube adaptor | Leica | Wild 10411576 |
Micropipette puller | Sutter Instruments | Model P-1000 |
Ultracentrifuge | Beckman | Optima L-90K |
Rotor | Beckman | VTi 50 |
Syringe | Hamilton | Cat# 80965 |
Bulldog clamp | Fine Scientific Tools | Cat# 18051-28 |
Mouse head holder | KOPF | Model 921-E |
Dumont #55 Forceps | Fine Science Tools | Cat# 11255-20 |
Dumont #5 Fine Forceps | Fine Science Tools | Cat# 11254-20 |
Dumont #5 Fine Forceps, only for optic nerve crush | Fine Science Tools | Cat# 11254-20 |
Scissors | Crimson International Eye instruments | Cat# 6004A-105 |
Heating pad | ConductScience | Cat# RWD-800-00179-00 |
OptiSeal centrifuge tube | Beckman | Cat# 362183 |
15 mL Amicon centrifugal filters | Fisher Scientific | Cat# UFC901024 |
0.5 mL Amicon centrifugal filters | Fisher Scientific | Cat# UFC501024 |
PE tubing | Warner Instruments | Cat# 64-0752 |
Glass capillaries | Sutter Instrument | Cat# BF150-75-10 |
Underpads | Fisher Scientific | Cat# 22-037-950 |
Slides | Fisher Scientific | Cat# 22-034979 |
Cover glass | Fisher Scientific | Cat# 12-542A |