TABLE 2.
Identities of nucleotide sequences and amino acid sequences shown in Fig. 1
| Strain | % Identitya
|
|||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ch.1 | Ch.2 | Ch.3 | CHb | CXj | Pk | Ind532 | Np | Br | Ind | My | Egy | Chad | swUS | US-1 | swT74 | T821 | Mx | |
| Ch.1 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Ch.2 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Ch.3 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| CHb | 99.5 | 99.5 | 99.5 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| CXj | 99.5 | 99.5 | 99.5 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Pk | 98.4 | 98.4 | 98.4 | 98.9 | 98.9 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Ind532 | 92.4 | 92.4 | 92.4 | 93.0 | 93.0 | 93.0 | 100.0 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Np | 93.5 | 93.5 | 93.5 | 94.1 | 94.1 | 94.1 | 98.9 | 100.0 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Br | 93.5 | 93.5 | 93.5 | 94.1 | 94.1 | 93.0 | 98.9 | 98.9 | 100.0 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Ind | 92.4 | 92.4 | 92.4 | 93.0 | 93.0 | 91.9 | 97.8 | 96.8 | 97.8 | 100.0 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| My | 94.6 | 94.6 | 94.6 | 94.1 | 94.1 | 93.0 | 97.8 | 97.8 | 98.9 | 97.8 | 98.4 | 98.4 | 95.1 | 95.1 | 90.2 | 91.8 | 83.3 | |
| Egy | 87.0 | 87.0 | 87.0 | 87.5 | 87.6 | 86.5 | 87.6 | 87.6 | 88.6 | 88.6 | 88.6 | 100.0 | 93.4 | 93.4 | 88.5 | 90.2 | 81.7 | |
| Chad | 89.2 | 89.2 | 89.2 | 89.7 | 89.7 | 88.6 | 88.1 | 88.1 | 89.2 | 89.2 | 89.2 | 96.8 | 93.4 | 93.4 | 88.5 | 90.2 | 81.7 | |
| swUS | 78.4 | 78.4 | 78.4 | 78.4 | 78.4 | 78.9 | 74.6 | 75.1 | 75.1 | 74.6 | 75.7 | 74.6 | 76.8 | 100.0 | 95.1 | 96.7 | 88.3 | |
| US-1 | 80.0 | 80.0 | 80.0 | 80.0 | 80.0 | 80.5 | 76.8 | 77.3 | 77.3 | 76.8 | 77.8 | 75.7 | 77.3 | 92.4 | 95.1 | 96.7 | 88.3 | |
| swT74 | 69.2 | 69.2 | 69.2 | 69.7 | 69.7 | 70.3 | 68.6 | 69.2 | 69.2 | 68.6 | 69.2 | 67.0 | 68.6 | 80.0 | 77.3 | 98.4 | 88.3 | |
| T821 | 72.4 | 72.4 | 72.4 | 73.0 | 73.0 | 73.5 | 71.9 | 72.4 | 72.4 | 71.9 | 72.4 | 70.3 | 71.9 | 81.6 | 78.4 | 97.3 | 86.7 | |
| Mx | 70.9 | 70.9 | 70.9 | 70.9 | 70.9 | 70.3 | 68.7 | 69.8 | 69.8 | 69.2 | 70.9 | 71.9 | 69.2 | 69.8 | 66.5 | 71.4 | 70.3 | |
The percent identities below the diagonal space are for nucleotide sequences, and those above the diagonal space are for amino acid sequences.