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. 2021 Nov 8;9:e12423. doi: 10.7717/peerj.12423

Table 2. Summary of the permutations performed in this study, indicating software, search type, and general characterization of the analysis with respect to taxon and character sampling.

Analysis Software Search Taxon sample Character matrix
1A TNT Heuristic This study This study
1B TNT Heuristic This study This study
2 TNT Heuristic This study This study
3 TNT Heuristic This study This study
4 TNT Heuristic This study This study
5 PAUP* Both Dilkes (2020) This study
6 TNT Branch-and-bound Gee (2020b) This study
7 PAUP* Branch-and-bound Dilkes (2020) Dilkes (2020), with scoring changes
8 PAUP* Branch-and-bound Gee (2020b) This study
9A TNT Branch-and-bound Dilkes (2020) Dilkes (2020), original scores
9B TNT Branch-and-bound Dilkes (2020) Dilkes (2020), with scoring changes

Note:

The heuristic search in TNT is termed ‘traditional search,’ and the branch-and-bound search is termed ‘implicit enumeration.’