TABLE 3.

The gene ontologies of mutually differentially expressed genes (DEGs) of homo-grafted watermelon (WW) and homo-grafted squash (SS).

Gene ontologies of DEGs
Biological Process		Molecular Function		Cellular Component
GO:0006950	Response to stress	GO:0016787	Motor activity	GO:0005576	Extracellular region
GO:0010466	Negative regulation of peptidase activity	GO:0016798	Hydrolase activity, acting on glycosyl bonds	GO:0048046	Apoplast
GO:0010951	Negative regulation of Endopeptidase activity	GO:0016491	Oxidoreductase activity	GO:0016020	Membrane
GO:0005975	Carbohydrate metabolic process	GO:0050660	Flavin adenine dinucleotide binding	GO:0016021	Integral component of membrane
GO:0008152	Metabolic process	GO:0015238	Xenobiotic transmembrane transporter activity	GO:0009507	Chloroplast
GO:0071555	Cell wall organization	GO:0015297	Antiporter activity	GO:0005886	Plasma membrane
GO:0055114	Obsolete oxidation-reduction process	GO:0004601	Peroxidase activity
GO:0006855	Drug transmembrane transport	GO:0020037	Heme binding
GO:0055085	Transmembrane transport	GO:0046872	Metal ion binding
GO:0006979	Response to oxidative stress	GO:0005509	Calcium ion binding
GO:0042744	Hydrogen peroxide catabolic process	GO:0003824	Catalytic activity
GO:0006355	Regulation of transcription, DNA-templated	GO:0005524	ATP binding
GO:0008643	Carbohydrate transport	GO:0008289	Lipid binding
GO:0006090	Pyruvate metabolic process	GO:0016740	Transfer activity
GO:0016310	Phosphorylation
GO:0006952	Defense response
GO:0009607	Response to biotic stimulus
GO:0006869	Lipid transport