TABLE 3.
Description and genomic positions of four sets of primers designed for mPCR according to PCV-1 sequencea
| mPCR | Primer | Sequence (5′–3′) | Genomic position | Template | Amplicon (bp) | % Homology between PCV-1 and PCV-2 | Specificity for strain:
|
|
|---|---|---|---|---|---|---|---|---|
| PCV-1 | PCV-2 | |||||||
| 1 | ORF1.PCV1.S3 | CGGAGAGGAAGGTTTGGAAG | 172–191 | ORF1 | 375 | 60 | + | − |
| ORF1.PCV1.AS2 | GTGTACAGCTGTCTTCCAATC | 527–547 | ORF1 | 86 | ||||
| ORF2.PCV1.S | ATGACGTGGCCAAGGAGGCGTTAC | 1723–1700 | ORF2 | 488 | 92 | + | + | |
| ORF2.PCV.1AS | GTGAAGTACCTGGAGTGGTAGG | 896–916 | ORF2 | 91 | ||||
| 2 | ORF1.PCV1.S2 | GAGGTGGGTGTTCACCCT | 82–97 | ORF1 | 646 | 94 | + | + |
| ORF1.PCV1.AS6 | GGATGATCTACTGAGACTGTGTG | 706–728 | ORF1 | 100 | ||||
| ORF2.PCV1.S1 | GGGTTACAAAGTTGGCATCCAAG | 1327–1350 | ORF2 | 407 | 70 | + | − | |
| ORF2.PCV1.AS1 | CACTTTTATAGGATGACGTGG | 1714–1734 | ORF2 | 52 | ||||
Nucleotide sequences and their localization on the PCV-1 genome were given in reference to those of the sequence of the prototype ATCC CCL-33 strain of PCV-1 (GenBank accession no. 49186) (23).