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Primary analysis: Overall look; variant threshold was set at 0.4% for exome, lowCov, and highCov, and 2.5% for PCP. (A) Mean coverage per sample and per sequencing run/pipeline; (B) Number of variants per sequencing run/pipeline; (C) Mappability and haplogroup assignment per sequencing run/pipeline (TSS is not shown since it does not output raw data). Error bars denote standard error of the mean (SEM). Abbreviations: PCP—PrecisionCallerPipeline; TSS—Ion Torrent Suite™ Software.
