Table 1.
DEGs related to Cu homeostasis in LCGSEC.
| Accession No. | KEGG | Swiss-Prot | Log2(FC) |
|---|---|---|---|
| Cu ion transmembrane transporter activity (GO:0005375) | |||
| Cg4g018610 | Solute carrier family 31 (copper transporter), member 1 | Copper transporter 5; AtCOPT5 | −1.317 |
| Cg8g023350 | Solute carrier family 31 (copper transporter), member 1 | Copper transporter 1; AtCOPT1 | −3.606 |
| Cg8g023360 | Solute carrier family 31 (copper transporter), member 1 | Copper transporter 1; AtCOPT1 | −1.076 |
| Cg8g023380 | Solute carrier family 31 (copper transporter), member 1 | Copper transporter 1; AtCOPT1 | −8.212 |
| Cg6g005770 | Solute carrier family 31 (copper transporter), member 1 | Copper transporter 1; AtCOPT1 | 3.407 |
| Yellow Stripe-Like (YSL) family | |||
| Cg5g018670 | Fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1] | Metal-nicotianamine transporter YSL3; Protein YELLOW STRIPE LIKE 3; AtYSL3 | −1.609 |
| Cg5g020560 | Fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1] | Probable metal-nicotianamine transporter YSL5; Protein YELLOW STRIPE LIKE 5; AtYSL5 | −1.066 |
| Cu ion binding (GO:0005507) and/or Cu proteins | |||
| Cg1g028930 | l-ascorbate oxidase [EC:1.10.3.3] | l-ascorbate oxidase | −3.067 |
| Cg2g001710 | Enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] | Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic | 1.679 |
| Cg2g018560 | Iron transport multicopper oxidase | l-ascorbate oxidase homolog | 1.069 |
| Cg3g024840 | Iron transport multicopper oxidase | l-ascorbate oxidase homolog | 1.455 |
| Cg3g024680 | Plastocyanin | Plastocyanin, chloroplastic | −1.448 |
| Cg5g007370 | Glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] | Glutamate dehydrogenase 2 | 1.745 |
| Cg5g009340 | Copper chaperone for superoxide dismutase | Copper chaperone for superoxide dismutase, chloroplastic/cytosolic; AtCCS | 1.588 |
| Cg7g012360 | Glutathione S-transferase [EC:2.5.1.18] | Glutathione S-transferase F9 | −1.318 |
| Cg8g018870 | Superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | Superoxide dismutase [Cu-Zn], chloroplastic | 1.344 |
| Cg9g013180 | Cytochrome c oxidase subunit 3 | Cytochrome c oxidase subunit 3 | −1.324 |
| CgUng010240 | Cytochrome c oxidase subunit 2 | Uncharacterized mitochondrial protein AtMg00530 | −1.581 |
| Cu chaperones | |||
| Cg5g009340 | Copper chaperone for superoxide dismutase | Copper chaperone for superoxide dismutase, chloroplastic/cytosolic; AtCCS | 1.588 |
| Others | |||
| Cg3g000750 | Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5] | Cadmium/zinc-transporting ATPase HMA2 | −1.403 |
| Cg4g006740 | Solute carrier family 39 (zinc transporter), member 1/2/3 | Zinc transporter 4, chloroplastic; ZRT/IRT-like protein 4 | −1.718 |
| Cg8g022750 | Solute carrier family 39 (zinc transporter), member 1/2/3 | Zinc transporter 1; ZRT/IRT-like protein 1; OsZIP1 | −2.937 |
| Cg5g041700 | Ferric-chelate reductase [EC:1.16.1.7] | Ferric reduction oxidase 2; AtFRO2; EC = 1.16.1.7; Ferric-chelate reductase 2 | 3.591 |
| Cg1g023140 | Ferric-chelate reductase [EC:1.16.1.7] | (RefSeq) ferric reduction oxidase 7, chloroplastic-like (A) | NAC domain-containing protein 104 {ECO:0000305} | 3.271 |
| Cg2g021360 | Ferric-chelate reductase [EC:1.16.1.7] | (RefSeq) ferric reduction oxidase 7, chloroplastic-like (A) | NAC domain-containing protein 72 | 2.012 |
| Cg5g010410 | Ferric-chelate reductase [EC:1.16.1.7] | (RefSeq) ferric reduction oxidase 7, chloroplastic-like (A) | NAC domain-containing protein 100 {ECO:0000303|PubMed:15029955} | 1.441 |
| Cg6g025130 | Ferric-chelate reductase [EC:1.16.1.7] | (RefSeq) ferric reduction oxidase 7, chloroplastic-like (A) | NAC domain-containing protein 100 {ECO:0000303|PubMed:15029955} | 1.777 |
| Cg8g013730 | Ferric-chelate reductase [EC:1.16.1.7] | (RefSeq) ferric reduction oxidase 7, chloroplastic-like (A) | NAC domain-containing protein 90 | −1.805 |
FC: fold change.