Table 1.
Statistics for small ribonucleic acid (sRNA) sequencing data.
Sample | Clean reads | Mapped reads | Unique reads | rRNA | snRNA | snoRNA | sRNA | Known miRNA | Novel miRNA |
---|---|---|---|---|---|---|---|---|---|
Int409R1 | 16,859,089 | 12,241,995 | 2,758,364 | 1,486,968 | 19,291 | 172,035 | 1,653,701 | 82,770 | 21,027 |
Int409R2 | 19,437,857 | 13,583,672 | 4,032,739 | 1,211,671 | 21,381 | 111,524 | 2,383,874 | 113,822 | 25,952 |
Int409R3 | 21,045,591 | 14,970,123 | 3,579,575 | 1,445,208 | 20,273 | 125,781 | 1,935,638 | 97,756 | 21,985 |
Int409S1 | 19,151,421 | 12,602,830 | 2,799,605 | 1,863,049 | 7,194 | 157,600 | 1,350,982 | 23,185 | 5,227 |
Int409S2 | 19,510,896 | 13,667,504 | 3,262,226 | 1,374,644 | 14,476 | 107,191 | 1,917,801 | 81,051 | 19,851 |
Int409S3 | 20,746,687 | 11,014,507 | 2,798,106 | 1,095,158 | 9,442 | 72,987 | 1,391,531 | 48,203 | 10,476 |
Mock409R1 | 40,544,489 | 38,503,590 | 4,241,862 | 6,659,234 | 25,051 | 104,159 | 3,113,301 | 42,488 | 11,810 |
Mock409R2 | 19,357,053 | 12,378,257 | 3,447,958 | 1,540,456 | 14,423 | 113,443 | 1,823,459 | 43,758 | 15,757 |
Mock409R3 | 20,253,468 | 17,466,642 | 3,452,723 | 2,277,865 | 22,780 | 143,708 | 2,313,145 | 91,820 | 25,996 |
Mock409S1 | 17,482,155 | 13,689,066 | 3,305,874 | 2,014,105 | 12,946 | 103,905 | 1,904,936 | 47,190 | 10,243 |
Mock409S2 | 17,722,621 | 15,665,194 | 3,068,502 | 1,307,612 | 30,046 | 245,728 | 2,172,936 | 84,126 | 24,971 |
Mock409S3 | 19,267,299 | 16,255,438 | 3,708,198 | 1,260,635 | 27,666 | 115,800 | 2,383,375 | 91,333 | 30,239 |
Average | 20,948,219 | 16,003,152 | 3,371,311 | 1,961,384 | 18,747 | 131,155 | 2,028,723 | 70,625 | 18,628 |