TABLE 3.
Protein or ribosomes | Protein
|
|
---|---|---|
No. of molecules per cell | % Soluble | |
Upf1p | 1,600 | 0.007 |
Nmd2p | 160 | 0.0007 |
Upf3p | 80 | 0.00035 |
Sup45p | 29,600b | 0.2b |
Xrn1p | 29,000c | 0.2c |
Ribosomes | 300,000d | 7 |
The relative abundance of Upf1p and Nmd2p was determined by comparing Western blot band intensities of the UPF/NMD factors present in crude cell extracts to those of the individual proteins. For Upf1p and Nmd2p, highly purified recombinant GST-Upf1p and GST-Nmd2p were used as standards, respectively. For Upf3p, cells bearing an HA-NMD2 allele were used as the standard. Calculations used to derive protein abundance are summarized in Materials and Methods.
Cellular Sup45p levels determined by Gygi et al. (16).
Cellular Xrn1p levels determined by Heyer et al. (25).
Cellular levels of ribosomes determined by Waldron and Lacroute (56).