| Biological samples |
|
| Odonata and Outgroups |
This paper |
Table S1 |
| Ladona fulva, Ephemera danica, Daphnia pulex and Zootermopsis nevadensis |
i5K; Colbourne et al., 2011; Terrapon et al.,2014
|
Table S4 |
|
| Deposited data |
|
| Transcriptome sequences – deposited to NCBI |
This paper |
Table S3 |
|
| Software and algorithms |
|
| SOAPdenovo-Trans-31kmer |
|
https://github.com/aquaskyline/SOAPdenovo-Trans |
| Orthograph (v.0.5.7) |
Petersen et al., 2017 |
https://github.com/mptrsen/Orthograph/ |
| BLAST+ (v.2.2.28) |
Camacho et al., 2009 |
https://bioweb.pasteur.fr/packages/pack@blast+@2.2.28 |
| Exonerate (v.2.2) |
Slater and Birney, 2005 |
https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate |
| MAFFT (v.7.123) |
|
https://mafft.cbrc.jp/alignment/software/ |
| Pal2Nal (v.14) |
Suyama et al., 2006, with modifications as in Misof et al., 2014 [S2] |
http://www.bork.embl.de/pal2nal/ |
| HMMER package (version 3.1b2) |
Finn et al., 2011 |
http://hmmer.org/ |
| Pfam database release 28.0 |
Punta et al., 2012; Finn et al. 2016
|
https://pfam.xfam.org |
| Domain-identification-v1.3 and Domain-parser-v1.4.1 programs |
1kite, Misof et al., 2014
|
Available upon request. |
| Aliscore (v.1.2) |
Misof and Misof, 2009; Kück et al., 2010
|
https://www.zfmk.de/en/research/research-centres-and-groups/aliscore |
| MARE (v.0.1.2-rc) |
|
https://www.zfmk.de/en/research/research-centres-and-groups/mare |
| SymTest (v.2.0.47) |
Jermiin and Ott, 2017 |
https://github.com/ottmi/symtest |
| AliStat (v.1.6) |
Wong et al., 2020 |
https://github.com/thomaskf/AliStat |
| PartitionFinder 2.0.0 (version- pre release 13) |
Lanfear et al., 2014, Lanfear et al., 2016
|
http://www.robertlanfear.com/partitionfinder/ |
| RAxML (v.8.2.8) |
Stamatakis, 2014 |
https://cme.h-its.org/exelixis/web/software/raxml/ |
| IQTREE (v.1.4.3 and v. 1.6.1) |
Chernomor et al., 2016; Nguyen et al., 2015
|
http://www.iqtree.org |
| Unique Tree (v.1.9) |
Thomas Wong |
Available from Thomas Wong upon request |
| RogueNaRok (v.1.0) |
Aberer et al., 2013 |
https://github.com/aberer/RogueNaRok |
| PAML( v.4.9e) |
Yang 2007 V |
http://abacus.gene.ucl.ac.uk/software/paml.html |
| Tracer (v.1.6) |
Rambaut et al., 2018 |
https://github.com/beast-dev/tracer/releases/tag/v1.7.1 |
