| Abr. | Full Name | Abr. | Full Name |
| ADNP | Activity-dependent neuroprotective protein | MARs | Matrix attachment regions |
| ASH2 | Ash2 histone methyltransferase complex subunit ASH2 | MCF-10A | MCF 10A cell line is a non-tumorigenic epithelial cell line |
| BPTF | bromodomain PHD finger transcription factor | MCF-7 | Michigan Cancer Foundation-7 |
| BT-474 | breast tumor cell line BT-474 | MDA-MB-453 | MDA-MB-453 is a human breast cancer cell line |
| BT-549 | human breast cancer cell line BT549 | MDA-MB-468 | MD Anderson-Metastatic Breast-468 |
| CCAN | constitute centromere-associated network | MLL | Mixed Lineage Leukemia (MLL) Protein |
| CDYL1 | Chromodomain protein Y-like 1 | MNase | Micrococcal nuclease |
| CENP-C, or CAF-1 | Centromere Protein C, Chromatin assembly factor-1 |
MPG | human N-methylpurine–DNA glycosylase (MPG) gene |
| ChEP | Chromatin enrichment for proteomics | Mre11 | Meioticrecombination 11 |
| CUT&RUN | cleavage under targets and release using nuclease | mRNA | MessengerRNA |
| DDB1 | Damaged DNA binding protein 1 | MS | Mass spectrometry |
| DDX5 | DEAD-Box Helicase 5 | MSH2 | MutS homolog 2 |
| DNA | Deoxyribonucleic acid | MSH6 | MutS homolog 6 |
| DSBs | double strands breaks | Nbs1 | Nijmegen breakage syndrome 1 (Nbs1) |
| FACTp80 | Facilitates Chromatin Transcription 80 kD subunit | NHEJ | Non-homologous end joining |
| FEN1 | Flap endonuclease 1 | PA2G4 | Proliferation-associated protein 2G4 |
| G1, S, G2 | Gap 1, Synthesis, Gap 2 | PcG proteins | Poly comb group proteins |
| H1 | Histone 1 | PHF2 | Plant homeodomain finger 2 |
| H2A | Histone H2A | PHP2 | Pseudohypoparathyroidism type 2 |
| H3 | Histone 3 | PK | Proteinase k |
| HBL-100 | HBL-100 is an epithelial cell line | POGZ | Pogo Transposable Element Derived With ZNF Domain |
| HCC1954 | HCC1954 is positive for the epithelial cell | POT1 | Protection of telomeres protein 1 |
| HEK293 | primary embryonic human kidney (HEK293), | PTMs | Post Translational Modifications |
| HeLa | human cells derived from cervical cancer | PUF60 | Poly-binding-splicing factor PUF60 |
| HepG2 | human liver cancer cell line | QqTOF | quadrupole-quadrupole-time-of-flight (QqTOF) |
| HNRNPK | Heterogeneous nuclear ribonucleoprotein K | QTIP | Quantitative Telomeric Chromatin Isolation Protocol |
| HP1 | Heterochromatin Protein 1 | racGAP | Rac GTPase-activating protein 1 |
| HPC3 | Hereditary Prostate Cancer 3 | Rap1 | Ras-proximate-1 |
| HR | homologous recombination | RFC4 | Replication factor C subunit 4 |
| Hs578T | breast cancer cell line. HS578T | rRNA | Ribosomal RNA |
| hSNF2H | Sucrose nonfermenting protein 2 homolog | SDS-PAGE | sodium dodecyl sulphate-polyacrylamide gel electrophoresis |
| Hsp 70 | 70 kilodalton heat shock proteins | SK-BR-3 | SK-BR-3 is a human breast cancer cell line |
| ILF2 | Interleukin Enhancer Binding Factor 2 | SMCHD1 | Structural Maintenance of Chromosomes flexible Hinge Domain Containing 1 |
| ILF3 | Interleukin enhancer-binding factor 3 | SUM1315MO2 | Cellosaurus SUM1315MO2 cell line |
| iMDK | midkine inhibitor | SUM159PT | Cellosaurus SUM159PT cell line |
| iTRAQ | Isobaric tags for relative and absolute quantitation | T-47D | T-47D is a human breast cancer cell line, |
| KDM2A | Lysine-specific demethylase 2A | TIN2 | TERF1-interacting nuclear factor 2 |
| Ku70/Ku80 | Ku is a dimeric protein complex of DNA repair. | TPP1 | Tripeptidyl Peptidase 1 |
| LCRs | Locus control regions | TRF1/TRF2 | Telomeric repeat-binding factor 1 and 2 |
| LNA | Locked Nucleic Acids | tRNA | Transfer RNA |
| LRIF1 | Ligand Dependent Nuclear Receptor Interacting Factor 1 | U2OS | osteosarcoma U2OS cell line |
| LSD1 | Lysinedemethylase 1 | uvDDB-1 | Ultraviolet DNA damage binding protein 1 |
| LY2 | LY2 breast cancer cells | ZR-75-1 cell line | ZR-75-1 is a human breast cancer cell line |