Table 1. Representative part of the input data for OMnalysis.

The table presents part of Supplemental file 5. The underlined part in the table explains the source and it is not a part of the data matrix. Please note that the input table must contain the following headers: ENSEMBLGENE, logFC, logCPM and P value. The first column must be Ensembl IDs and then logFC, logCPM and Pvalue of each treatment in order as shown in table. col –column. In Pvalue column, user can add either P value or FDR adjusted P value.

Ensembl IDs	Treatment1			Treatment2			Treatment3			Treatment4
col. 1	col. 2	col. 3	col. 4	col. 5	col. 6	col. 7	col. 8	col. 9	col. 10	col. 11	col. 12	col. 13
ENSEMBLGENE	logFC	logCPM	Pvalue	logFC	logCPM	Pvalue	logFC	logCPM	Pvalue	logFC	logCPM	Pvalue
ENSG00000000003	−0.74375	4.557846	0.267133	−0.90616	4.557846	0.141092	0.417361	4.557846	0.581714	−0.35996	4.557846	0.640167
ENSG00000000419	0.108453	4.758842	0.890174	0.096469	4.758842	0.902259	−0.12866	4.758842	0.872534	−0.78139	4.758842	0.254466
ENSG00000000460	−0.45651	1.782839	0.559013	−0.13903	1.782839	0.8607	−1.43246	1.782839	0.043123	0.792963	1.782839	0.277646
ENSG00000000971	−0.45012	6.933399	0.553369	−0.32462	6.933399	0.676356	0.131856	6.933399	0.868554	−0.62059	6.933399	0.380078
ENSG00000001036	−0.06613	5.462408	0.934619	−0.35845	5.462408	0.642259	−0.29022	5.462408	0.710371	0.171774	5.462408	0.827248
ENSG00000001084	−0.18668	4.100634	0.813381	−0.62329	4.100634	0.381325	0.057774	4.100634	0.941401	−0.01379	4.100634	0.986338
ENSG00000001167	0.414895	3.653166	0.584106	0.34253	3.653166	0.656407	−0.38414	3.653166	0.615672	0.178518	3.653166	0.820939
ENSG00000001461	−0.73107	5.259942	0.275607	−1.37751	5.259942	0.002377	−0.39492	5.259942	0.606211	−1.1324	5.259942	0.0298
ENSG00000001497	0.018868	4.674989	0.980772	0.013774	4.674989	0.985861	−0.41221	4.674989	0.589126	−0.54674	4.674989	0.454072
ENSG00000000003	−0.74375	4.557846	0.267133	−0.90616	4.557846	0.141092	0.417361	4.557846	0.581714	−0.35996	4.557846	0.640167