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PLOS One logoLink to PLOS One
. 2021 Nov 12;16(11):e0259910. doi: 10.1371/journal.pone.0259910

Atypical lymphocytes in the peripheral blood of COVID-19 patients: A prognostic factor for the clinical course of COVID-19

Jun Sugihara 1,2,*, Sho Shibata 1,2, Masafumi Doi 1, Takuya Shimmura 1, Shinichiro Inoue 1, Osamu Matsumoto 3, Hiroyuki Suzuki 3, Ayaka Makino 3, Yasunari Miyazaki 2
Editor: Baochuan Lin4
PMCID: PMC8589156  PMID: 34767614

Abstract

Background

Clinical observations have shown that there is a relationship between coronavirus disease 2019 (COVID-19) and atypical lymphocytes in the peripheral blood; however, knowledge about the time course of the changes in atypical lymphocytes and the association with the clinical course of COVID-19 is limited.

Objective

Our purposes were to investigate the dynamics of atypical lymphocytes in COVID-19 patients and to estimate their clinical significance for diagnosis and monitoring disease course.

Materials and methods

We retrospectively identified 98 inpatients in a general ward at Kashiwa Municipal Hospital from May 1st, 2020, to October 31st, 2020. We extracted data on patient demographics, symptoms, comorbidities, blood test results, radiographic findings, treatment after admission and clinical course. We compared clinical findings between patients with and without atypical lymphocytes, investigated the behavior of atypical lymphocytes throughout the clinical course of COVID-19, and determined the relationships among the development of pneumonia, the use of supplemental oxygen and the presence of atypical lymphocytes.

Results

Patients with atypical lymphocytes had a significantly higher prevalence of pneumonia (80.4% vs. 42.6%, p < 0.0001) and the use of supplemental oxygen (25.5% vs. 4.3%, p = 0.0042). The median time to the appearance of atypical lymphocytes after disease onset was eight days, and atypical lymphocytes were observed in 16/98 (16.3%) patients at the first visit. Atypical lymphocytes appeared after the confirmation of lung infiltrates in 31/41 (75.6%) patients. Of the 13 oxygen-treated patients with atypical lymphocytes, approximately two-thirds had a stable or improved clinical course after the appearance of atypical lymphocytes.

Conclusion

Atypical lymphocytes frequently appeared in the peripheral blood of COVID-19 patients one week after disease onset. Patients with atypical lymphocytes were more likely to have pneumonia and to need supplemental oxygen; however, two-thirds of them showed clinical improvement after the appearance of atypical lymphocytes.

Introduction

Coronavirus disease 2019 (COVID-19), an emerging disease caused by a coronavirus, has imposed a substantial health burden worldwide. Since the first report in December 2019, there have been approximately 149 million cases of COVID-19 and approximately 3 million related deaths worldwide as of April 29, 2021 [1]. COVID-19 has a broad spectrum of manifestations, ranging from asymptomatic cases or cases of mild symptoms similar to those of the common cold to cases of severe respiratory disease with systemic inflammation and thrombosis. The clinical characteristics hinder its prompt diagnosis and the prediction of the clinical course of the disease, and many efforts to clarify the characteristics of this disease have been made.

Atypical lymphocytes are large lymphocytes with varied morphology in the peripheral blood of patients with several viral infections, such as Epstein-Barr virus infection, cytomegalovirus infection, rubella, Hantavirus infection, viral hepatitis and HIV infection [2]. Several studies have shown that atypical lymphocytes have also been found in the peripheral blood [35] and bronchoalveolar lavage (BAL) samples [6] of COVID-19 patients. It may reflect the disease pathophysiology and provide important information about the diagnosis or prognosis of the disease.

However, few studies have reported the clinical significance of atypical lymphocytes in COVID-19 patients. A retrospective analysis surveying data from patients’ first visits demonstrated that a positive result on a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) polymerase chain reaction (PCR) was related to a significantly higher prevalence of atypical lymphocytes than a negative PCR result [7], and another study comparing COVID-19 patients hospitalized in the intensive care unit (ICU) and non-ICU wards indicated that atypical lymphocytes were associated with a milder clinical course of the disease [8]. However, there is limited information about the time course of the number or proportion of atypical lymphocytes in the peripheral blood. Such information would be useful for estimating the clinical course of COVID-19.

Therefore, we investigated the relationship between atypical lymphocytes and the clinical course of COVID-19 and aimed to demonstrate the clinical significance of that relationship in the present study.

Materials and methods

Study design and patients

This is a retrospective cohort study. We enrolled consecutive COVID-19 patients admitted to Kashiwa Municipal Hospital from May 1st, 2020, to October 31st, 2020, in this study. Their diagnoses were confirmed with positive results on reverse-transcription PCR assays for SARS-CoV-2. All patient admissions were determined by regional public health centers because they were responsible for determining which COVID-19 patients should be hospitalized and which should recuperate at home in Japan. Each hospital was assigned the task of caring for patients with mild-to-moderate COVID-19 or patients with severe COVID-19 (requiring ICU care) based on the capacity. Our hospital was assigned to care for patients with mild-to-moderate COVID-19. If the condition of the patients worsened and they required ICU care, we transferred them to the appropriate hospitals.

Data collection

We collected the clinical data pertaining to the enrolled patients from the medical records at Kashiwa Municipal Hospital. The collected data were demographics, symptoms before admission, comorbidities, blood test results, radiographic findings, treatment after admission and the clinical course.

The symptoms included fever (defined as temperature ≥ 37.5°C), upper respiratory symptoms (sore throat, rhinorrhea and nasal congestion), lower respiratory symptoms (cough, sputum and dyspnea), constitutional symptoms (fatigue, myalgia, arthralgia, headache and chills), olfactory or taste dysfunction, and loose stool. We also inquired the day the symptoms had started, which was designated the day of the onset of disease.

The comorbidities included hypertension, diabetes mellitus, chronic heart disease, chronic obstructive pulmonary disease (COPD), chronic kidney disease, coronary vascular disease, cerebrovascular disease and malignancy.

The blood tests included a complete blood count with white blood cell (WBC) differential, lactase dehydrogenase (LDH), total bilirubin (T-Bil), urea nitrogen (UN), creatinine and C-reactive protein (CRP). These tests were performed as part of routine clinical care. The complete blood count with WBC differential was performed with an XT-2000i hematologic analyzer (Sysmex Co., Kobe) for all samples. When the analyzer detected the existence of atypical lymphocytes, a laboratory technician (O.M., H.S. or A.M.) made a blood smear and examined it microscopically to confirm the morphological abnormalities and differential count. For those patients with abnormal lymphocytes, we also obtained the percentage of atypical WBCs, the time of the appearance of the atypical lymphocytes and whether they were present at the first visit.

The computed tomography scans were evaluated to determine the radiographic findings. Pulmonologists (J.S., T.S., M.D. and S.S., with eight, eight, nine, and twelve years of experience, respectively) reviewed the images and interpreted whether they had radiographic evidence of pneumonia compatible with COVID-19.

The treatments were supplemental oxygen, antivirals, and corticosteroids. The concentration of oxygen was also collected.

Ethics issues

This study was approved by the ethics committee of Kashiwa Municipal Hospital (#02–5, Feb 18th, 2020). The need to obtain written informed consent was waived because of the anonymous nature of the data. Instead, we announced the study officially and ensured that patients could opt out of the study.

Statistical methods

Categorical variables are expressed as numbers with percentages, and continuous variables are expressed as medians with interquartile ranges. Statistical analyses were conducted as follows: the Shapiro-Wilk test was used to assess the normality of the variable distributions; Student’s t test was used for comparisons of parametric continuous variables; one-way analysis of variance (ANOVA) was used for comparison of continuous variables among more than three groups; the Wilcoxon rank-sum test was used for comparisons of nonparametric continuous variables; and Fisher’s exact test was used to assess the ratios of categorical variables. All tests were conducted with R software. P values < 0.05 were considered statistically significant.

Results

Patient characteristics

A total of 98 patients were enrolled in the study, and we divided them into two groups based on the presence of atypical lymphocytes in the peripheral blood. The morphologies appeared as previously reported in papers [35] (representative cells are shown in Fig 1). Patient characteristics are shown in Table 1. All patients were discharged alive. The distributions of basic demographic features, such as age, sex and comorbidities, were not significantly different between those with and without atypical lymphocytes. However, patients with atypical lymphocytes tended to have a longer duration between symptom onset and their first visit. Regarding the signs and symptoms, while patients without atypical lymphocytes were more likely to be asymptomatic, patients with atypical lymphocytes were significantly more likely to have fever at the first visit. They also had a significantly higher likelihood of radiographic evidence of pneumonia and the need for supplemental oxygen than those without atypical lymphocytes. The distribution of atypical lymphocyte fractions is shown in Fig 2. Forty-seven out of 98 (48%) patients had a blood smear that did not show atypical lymphocytes. There were 9 patients with 1% atypical lymphocytes. Twelve and 13 patients had 2% and 3% atypical lymphocytes respectively, while 8 and 7 patients had 4 and 5% atypical lymphocytes, respectively. A higher fraction (7 and 8%) of atypical lymphocytes was observed in only 2 patients (one for each fraction). The date of the first identification of atypical lymphocytes after disease onset is shown in Fig 3. The median time from symptom onset to the appearance of atypical lymphocytes was eight days. The majority of the patients with atypical lymphocytes were detected 5–9 days after disease onset and peaked at nine days. At the first visit, atypical lymphocytes were found in 16/98 (16.3%) patients, and 5/61 (8.2%) patients with radiographic evidence of pneumonia did not have any pulmonary infiltration.

Fig 1. Representative atypical lymphocytes in the peripheral blood of COVID-19 patients.

Fig 1

All images are of May-Giemsa-stained peripheral blood smears. (A, B) Atypical lymphocytes with condensed chromatin, deep basophilic cytoplasm and eccentric nuclei. (C, D) Atypical lymphocytes with abundant pale cytoplasm and indented nuclei, resembling Downey II cells.

Table 1. Patient characteristics.

Atypical lymphocytes (+) Atypical lymphocytes (-) p-value a
No. of patients 51 47
Age (year) 49.0 (33.5–60.0) 37.0 (28.0–53.0) 0.0952
Sex (male) 35 (68.6%) 32 (68.1%) 1.0000
Onset to admission (day) 5.0 (3.0–8.0) 4.0 (2.0–5.5) 0.0214
Symptoms
    • Fever 45 (88.2%) 29 (61.7%) 0.0042
    • Upper respiratory 11 (21.6%) 17 (36.2%) 0.1231
    • Lower respiratory 26 (51.0%) 16 (34.0%) 0.1053
    • Constitutional 23 (45.1%) 23 (48.9%) 0.8397
    • Loose stool 5 (9.8%) 7 (14.9%) 0.5433
    • Olfactory/Taste 10 (19.6%) 9 (19.1%) 1.0000
Asymptomatic 0 (0.0%) 5 (10.6%) 0.0226
Comorbidities
    • Obesity 4 (7.8%) 2 (4.3%) 0.6792
    • Diabetes mellitus 9 (17.6%) 3 (6.4%) 0.1249
    • Hypertension 14 (27.5%) 6 (12.8%) 0.0838
    • Malignancy 0 (0.0%) 1 (2.1%) 0.4796
    • Others 3 (5.9%) b 4 (8.5%) c 0.7071
    • No. of comorbidities 0 (0–1) 0 (0–0.25) 0.1453
(maximum) 3 3
Radiographic evidence of pneumonia 41 (80.4%) 20 (42.6%) < 0.0001
Supplemental oxygen 13 (25.5%) 2 (4.3%) 0.0042
Therapeutic medications
    • Favipiravir 8 (15.7%) 3 (6.3%) 0.0075
    • Corticosteroids d 5 (9.8%) 0 (0.0%)
    • Both 5 (9.8%) 1 (2.1%)
    • None 33 (64.7%) 43 (91.5%)
Clinical outcome
    • ICU administration 2 (3.9%) 1 (2.1%) 1.0000

Data are presented as n (percentage) or the median (interquartile range), unless otherwise stated.

a Bolded numbers indicate p < 0.05 according to the Wilcoxon rank-sum test (continuous variables) or Fisher’s exact test (ratio of categorical variables).

b Including one with dilated cardiomyopathy, one with atrial fibrillation and one with tachycardia-bradycardia syndrome with pacemaker implantation.

c Including one with cerebrovascular disease, two with chronic kidney disease and one with chronic hepatitis.

d Corticosteroids included methylprednisolone (one patient) and dexamethasone (all others).

Fig 2. Distribution of the fractions of atypical lymphocytes.

Fig 2

The number of patients in each fraction of atypical lymphocytes is shown. Each patient was classified according to their peak value. Numbers above bars indicate the actual counts of each fraction.

Fig 3. First appearance of atypical lymphocytes after disease onset.

Fig 3

Patients were counted according to the day of the first identification of atypical lymphocytes after disease onset. The total number of patients who had atypical lymphocytes in their peripheral blood was 51. The median value was eight days.

Radiographic features

In COVID-19 patients, the observation of radiographic features characteristic of pneumonia tended to precede that of atypical lymphocytes. A total of 41 patients had both radiographic evidence of pneumonia and atypical lymphocytes. Among them, radiographic evidence of pneumonia was observed first in 31/41 (75.6%) patients, atypical lymphocytes were observed first in 2/41 (4.9%) patients, and both were observed on the same day in 8/41 (19.5%) patients. Fig 4A shows the time intervals between the appearance of the radiographic evidence of pneumonia and that of atypical lymphocytes for each patient.

Fig 4. Comparison of dates on which pneumonia and atypical lymphocytes appeared.

Fig 4

(A) Difference between the days on which radiographic evidence of pneumonia and atypical lymphocytes were detected in each patient. Total number of patients was 41. Bars represent the difference for each patient in days and are arranged in ascending order. A negative value (blue bar) indicates that the radiographic evidence of pneumonia appeared first, and a positive value (orange bar) indicates that atypical lymphocytes appeared first. (B) Beeswarm plot of the first day of detection. The bold dotted line indicates the median, and the thin dotted lines indicate the upper and lower quantiles. * p < 0.0001 by Wilcoxon rank-sum test.

The distributions of time of the first identification of atypical lymphocytes after disease onset are shown in Fig 4B. The median time from disease onset to the detection of atypical lymphocytes was nine days and that to the observation of radiographic evidence of pneumonia was five days, and the distributions were significantly different (p < 0.0001 by Wilcoxon rank-sum test).

Laboratory features

A total of 308 blood samples were collected during the study period. The mean interval between each blood test was 3.24 days (2.25–4.00). We chose the peak or nadir values as the representative values to investigate the relationship between the presence of atypical lymphocytes and laboratory test results. Table 2 shows the differences in each test between the patients with and without atypical lymphocytes. The peak values of neutrophils, lymphocytes, LDH and CRP were significantly higher in patients with atypical lymphocytes.

Table 2. Comparison of laboratory values.

Atypical lymphocytes (+) Atypical lymphocytes (-) p-value a
Peak atypical lymphocytes (106/L) 134.0 (93.5–222.0) 0 N/A
Peak neutrophils (109/L) 4.24 (2.74–5.52) 3.00 (2.49–4.26) 0.0069
Peak lymphocytes (109/L) 2.00 (1.61–2.41) 1.56 (1.22–1.93) 0.0004
Nadir lymphocytes (109/L) 1.15 (0.79–1.63) 1.10 (0.86–1.46) 0.6931
Peak N/L ratio 2.88 (1.80–5.88) 2.52 (1.55–4.15) 0.2642
Nadir Hb (g/L) 142.0 (131.5–152.0) 146.0 (139.5–153.5) 0.2320
Nadir PLT (109/L) 186.0 (133.5–210.0) 193.0 (165.0–221.5) 0.2765
Peak LDH (U/L) 249 (195–274.1) 177 (159–204) < 0.0001
Peak T-Bil (μmol/L) 11.97 (10.26–15.39) 11.97 (10.26–15.39) 0.7763
Peak UN (mmol/L) 5.14 (4.25–6.18) 4.32 (3.87–5.68) 0.1026
Peak Creatinine (μmol/L) 81.33 (66.30–87.52) 73.37 (62.32–80.44) 0.1777
Peak CRP (mg/L) 27.00 (7.55–69.10) 3.00 (0.55–16.75) < 0.0001

Abbreviations: N/A, not applicable; N/L ratio, neutrophil to lymphocyte ratio; RBC, red blood cell; Hb, hemoglobin; PLT, platelet. Data are presented as the median (interquartile range) unless otherwise stated.

a Bolded number indicates p < 0.05 in the Wilcoxon rank-sum test.

Disease course in patients with supplemental oxygen

Among the 51 patients who had atypical lymphocytes, 13 received supplemental oxygen therapy. We investigated the details of their clinical courses. Four patients showed a halt then an improvement of respiratory failure after the detection of atypical lymphocytes. In four patients, atypical lymphocytes appeared at the time that oxygen therapy was withdrawn. The other five patients experienced worsening of their condition after the presence of atypical lymphocytes. However, three of the five patients improved after mild worsening without requirements of intensive care. Two patients suffered severe worsening and needed to enter the ICU. The clinical charts of representative patients are summarized in Fig 5.

Fig 5. Clinical courses of representative patients who received supplemental oxygen.

Fig 5

Abbreviations: LyC, lymphocyte count; ALyC, atypical lymphocyte count. (A-D) Time course of lymphocyte count (yellow diamond), atypical lymphocyte count (blue circle) and amount of supplemental oxygen (gray bar) in representative patients. The number above the gray bar demonstrates the amount of oxygen in liters per minute, and double-headed arrows indicate the period of data collection for each patient. (A) A patient who improved after atypical lymphocytes were detected. (B) A patient who had already stopped oxygen therapy when atypical lymphocytes appeared. (C) A patient whose condition worsened after atypical lymphocytes appeared. (D) A patient who worsened when the presence of atypical lymphocytes was detected. This patient was admitted to the ICU on day 8. (E) Proportion of patients in each clinical category. A–D correspond to the categories mentioned above.

We compared the detection date of atypical lymphocytes, peak fraction of atypical lymphocytes and peak number of atypical lymphocytes among these clinical courses. As shown in Fig 6, there were no overt differences in these indices among clinical courses.

Fig 6. Comparison of clinical indices among clinical courses.

Fig 6

(A) Comparison of the date on which atypical lymphocytes appeared. (B) Comparison of the peak fraction of atypical lymphocytes. (C) Comparison of the peak number of atypical lymphocytes. Each plot indicates a patient in a group. No significant differences were detected among groups by one-way ANOVA.

Discussion

This study investigated the dynamics and clinical significance of atypical lymphocytes in the peripheral blood of COVID-19 patients. The results showed that atypical lymphocytes were found in approximately half of the COVID-19 patients; however, it took approximately one week from disease onset for them to appear. Considering their late appearance, atypical lymphocytes are not useful for the early diagnosis of COVID-19. They are likely to appear after the diagnosis has been made based on another test, such as PCR. However, the presence of atypical lymphocytes is thought to be a distinctive feature of COVID-19 compared to other viral respiratory infections. For example, a study that investigated viral influenza-like illnesses reported that 1/4 of the patients with human metapneumovirus infection, 2/10 of the patients with rhinovirus/enterovirus infection, 1/16 of the patients with respiratory syncytial virus infection and 3/5 of the patients with human parainfluenza virus-3 infection had atypical lymphocytes; however, the percentages of atypical lymphocytes in these patients ranged from one to three percent [9]. Two studies on SARS show conflicting results: one reported that 15.2% of the patients had atypical lymphocytes [10], and the other reported no patients [11]. Compared to these viral infections, COVID-19 tends to cause more frequent and intensive atypical lymphocytosis. This has implications for our understanding of the nature of COVID-19.

In the context of COVID-19, atypical lymphocytes are regarded as immunologically activated T cells. This idea is supported by the findings of several studies. One study revealed that patients with large lymphocytes (regarded as atypical lymphocytes) had abundant T cells, and patients with large lymphocytes had significantly more effector memory CD4-positve T cells and CD8-positive T cells than the patient without atypical lymphocytes [12]. Another report that investigated BAL samples from COVID-19 patients demonstrated that atypical lymphocytes in BAL samples were virtually all CD3-positive T cells, and a significant proportion of T cells (40–80%) in BAL samples expressed activation markers such as CD38, HLA-DR and CD25 [6]. Based on these results, we assume that the presence of atypical lymphocytes reflects the activation of T cells in response to infection with SARS-CoV-2.

In regard to T cell dynamics, it was reported that the levels of T cells were depressed seven to nine days after onset in patients with severe cases, while T cell counts were maintained in those with mild cases [13]. It was also reported that the initially reduced number of T cells in patients with severe COVID-19 rose approximately 15 days after onset [14]. These results suggest that the prolonged period from disease onset to the presence of atypical lymphocytes reflected the characteristics of lymphocyte dynamics in patients with COVID-19.

On the other hand, the appearance of atypical lymphocytes seemed to be associated with a favorable disease course, such as a decrease in or cessation of the need for supplemental oxygen, as was observed in approximately two-thirds of the patients in this study. This result was consistent with a previous study that suggested an association between atypical lymphocytes and mild disease [8]. A previous observational study showed that CD8-positive T cell counts were reduced in patients with severe COVID-19 and that they recovered in patients who responded to treatment [15], also suggesting the association of T cells with disease severity. It was shown that atypical lymphocyte count of BAL samples inversely correlated with the length of hospital stay and length on mechanical ventilation in COVID-19 patients [6]. These results seem to indicate that the activation of T cells plays an important role in recovery from COVID-19. Our research seems to reinforce this idea for two reasons: (1) pulmonary infiltration tended to precede the observation of atypical lymphocytes in many patients, and (2) although it correlated with an increasing incidence of radiographic evidence of pneumonia, the presence of atypical lymphocytes did not necessarily lead to clinical deterioration. However, we were not able to demonstrate the proportional relationship between the fraction/absolute number of atypical lymphocytes and disease severity. This may be thought to prove that the activation of T cells was not related to recovery from COVID-19. Our explanation is that disease severity is not merely a cause or a result of immunological activation. Though severe infection may activate T cells and increase atypical lymphocytes, less activated immunity may lead to worsening infection without activated T cells. When we considered the interaction of virus and immunity, it was not surprising that the number of atypical lymphocytes did not have a clear relationship with disease severity. At any rate, studies with much larger cohorts, including patients with more severe disease necessitating intubation, are needed to reveal the details of the pathophysiology and clinical significance. This should be explored in future research.

This study has several limitations. This is a single-center retrospective study and therefore subject to selection bias and information bias. The study design and public health policy in Japan necessitated the exclusion of patients with severe COVID-19 from the study, which may have influenced the low prevalence of comorbidities, given that COVID-19 tends to be exacerbated in patients with comorbidities. In this observational study, the presence of atypical lymphocytes or radiographic evidence of pneumonia could have been missed because we sometimes did not repeatedly examine patients with mild cases who did not have abnormalities on the first examination. To overcome these biases, further investigations at several institutions with ICUs need to be conducted.

Conclusion

In this study, we demonstrated that atypical lymphocytes frequently appeared in patients with COVID-19. Patients with atypical lymphocytes were more likely to have radiographic evidence of pneumonia and need supplemental oxygen; however, two-thirds of them had an improved clinical course after the presence of atypical lymphocytes.

Supporting information

S1 Appendix. Clinical data of patients.

(XLSX)

Acknowledgments

We acknowledge all the healthcare workers in Kashiwa Municipal Hospital who were involved in the clinical treatment of COVID-19 and all patients in our study.

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

This study is funded by Japan Agency for Medical Research and Development. S. S. received this award. Grant number is 21jk0210034h0002. URL of the funder is https://www.amed.go.jp/en/index.html The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

References

  • 1.WHO. WHO Coronavirus Disease (COVID-19) Dashboard: World Health Organization; 2021. [cited 2021 29 Apr]. Available from: doi: 10.1038/s41564-021-00961-5 [DOI] [Google Scholar]
  • 2.Fauci AS, Braunwald E, Kasper DL, Hauser SL, Longo DL, Jameson JL, et al., editors. Harrison’s Principles of Internal Medicine. 17th ed. New York: McGraw-Hill Professional; 2008. [Google Scholar]
  • 3.Chong VCL, Lim KGE, Fan BE, Chan SSW, Ong KH, Kuperan P. Reactive lymphocytes in patients with COVID-19. Br J Haematol. 2020;189(5):844. doi: 10.1111/bjh.16690 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.El Jamal SM, Salib C, Stock A, Uriarte-Haparnas NI, Glicksberg BS, Teruya-Feldstein J, et al. Atypical lymphocyte morphology in SARS-CoV-2 infection. Pathol Res Pract. 2020;216(9):153063. doi: 10.1016/j.prp.2020.153063 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Weinberg SE, Behdad A, Ji P. Atypical lymphocytes in peripheral blood of patients with COVID-19. Br J Haematol. 2020;190(1):36–39. doi: 10.1111/bjh.16848 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Gelarden I, Nguyen J, Gao J, Chen Q, Morales-Nebreda L, Wunderink R, et al. Comprehensive evaluation of bronchoalveolar lavage from patients with severe COVID-19 and correlation with clinical outcomes. Hum Pathol. 2021;113:92–103. doi: 10.1016/j.humpath.2021.04.010 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Nakanishi H, Suzuki M, Maeda H, Nakamura Y, Ikegami Y, Takenaka Y, et al. Differential Diagnosis of COVID-19: Importance of Measuring Blood Lymphocytes, Serum Electrolytes, and Olfactory and Taste Functions. Tohoku J Exp Med. 2020;252(2):109–119. doi: 10.1620/tjem.252.109 [DOI] [PubMed] [Google Scholar]
  • 8.Pozdnyakova O, Connell NT, Battinelli EM, Connors JM, Fell G, Kim AS. Clinical Significance of CBC and WBC Morphology in the Diagnosis and Clinical Course of COVID-19 Infection. Am J Clin Pathol. 2020;155(3):364–375. doi: 10.1093/ajcp/aqaa231 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Cunha BA, Connolly JJ, Irshad N. Are atypical lymphocytes present with viral influenza-like illnesses (ILIs) in hospitalized adults? Eur J Clin Microbiol Infect Dis. 2016;35(9):1399–1401. doi: 10.1007/s10096-016-2675-z [DOI] [PubMed] [Google Scholar]
  • 10.Lee N, Hui D, Wu A, Chan P, Cameron P, Joynt GM, et al. A major outbreak of severe acute respiratory syndrome in Hong Kong. N Engl J Med. 2003;348(20):1986–94. doi: 10.1056/NEJMoa030685 [DOI] [PubMed] [Google Scholar]
  • 11.Chng WJ, Lai HC, Earnest A, Kuperan P. Haematological parameters in severe acute respiratory syndrome. Clin Lab Haematol. 2005;27(1):15–20. doi: 10.1111/j.1365-2257.2004.00652.x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Merino A, Vlagea A, Molina A, Egri N, Laguna J, Barrera K, et al. Atypical lymphoid cells circulating in blood in COVID-19 infection: morphology, immunophenotype and prognosis value. J Clin Pathol. 2020. doi: 10.1136/jclinpath-2020-207087 [DOI] [PubMed] [Google Scholar]
  • 13.Liu J, Li S, Liang B, Wang X, Wang H, Li W, et al. Longitudinal characteristics of lymphocyte responses and cytokine profiles in the peripheral blood of SARS-CoV-2 infected patients. EBioMedicine. 2020;55:102763. doi: 10.1016/j.ebiom.2020.102763 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.He R, Lu Z, Zhang L, Fan T, Xiong R, Shen X, et al. The clinical course and its correlated immune status in COVID-19 pneumonia. J Clin Virol. 2020;127:104361. doi: 10.1016/j.jcv.2020.104361 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Wang F, Nie J, Wang H, Zhao Q, Xiong Y, Deng L, et al. Characteristics of Peripheral Lymphocyte Subset Alteration in COVID-19 Pneumonia. J Infect Dis. 2020;221(11):1762–9. doi: 10.1093/infdis/jiaa150 [DOI] [PMC free article] [PubMed] [Google Scholar]

Decision Letter 0

Baochuan Lin

3 Aug 2021

PONE-D-21-21070

Atypical lymphocytes in the peripheral blood of COVID-19 patients: a prognostic factor for the clinical course of COVID-19.

PLOS ONE

Dear Dr. Sugihara,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The reviewers agreed that this is an interesting study, however, there are a few comments that need to be addressed.  Please see reviewers' insightful comments below.  Personally, on a more detail level, I also have a few comments that need to be addressed. 1. Line 102 - 104:  Are these daily occurrence? If not daily, how often does this test performed.  2. Expand the explanation of Fig. 2.  For example:  47 out of 98 patients (48%) blood smear did not show atypical lymphocytes.  There are 9 patients with 1% atypical lymphocytes.  12 and 13 patients had 2% and 3% atypical lymphocytes respectively, while 8 and 7 patients had 4 and 5% atypical lymphocytes.  Higher fraction (7 & 8%) of atypical lymphocytes was observed in only 2 patients (one for each fraction).  This bags the question whether the fraction of atypical lymphocytes associated with disease severity.  The n of this study is probably too small to have an accurate estimate, but discuss may be warranted.  3. Expand explanation is also needed for Fig. 3.  For example.  The majority of the patients with atypical lymphocytes was detected 5 - 9 days after disease onset and peaked at 9 days.

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4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

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3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The current manuscript focused on the investigation of the dynamics of atypical lymphocytes in COVID-19 patients to estimate clinical significance in Japanese population. The conclusion is consistent with previous studies, which provide additional evidence of the values of atypical lymphocytes in COVID-19 in different populations. The manuscript is well written. I have a few minor suggestions as below:

1. The pictures in Figure 1 could be improved. The atypical lymphocytes can be enlarged with few surrounding red cells.

2. A recent study by Gelarden et al (Human Pathology, 2021 Jul; 113:92-103) reported the significance of atypical lymphocytes in bronchoalveolar lavage from COVID-19 patients that can be correlated with clinical outcomes. It would be better that the authors considering discussing their findings with this paper.

Reviewer #2: This is a good study providing information on timely requirements.

In the study, you have showed the atypical lymphocytes as a prognostic factor. Can it be used as a prognostic marker or a predictive marker for prognosis? if so on which day of identifying atypical lymphocyte could suggest pneumonia and related complications among covid-19 patients? This could be then further analysed to provide sensitivity and specificity of using atypical lymphocytes as a prognostic marker. Also address the following:

01. Number/percentage of atypical lymphocyte that could act as a prognostic factor on which day?

02. Gap between detection of atypical lymphocyte and pneumonia

03. statistical relation between oxygen therapy and predictive role of atypical lymphocyte in it.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Reviewer #1: No

Reviewer #2: Yes: Roshan Niloofa

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Nov 12;16(11):e0259910. doi: 10.1371/journal.pone.0259910.r002

Author response to Decision Letter 0


14 Sep 2021

Dear Dr. Baochuan Lin,

Thank you very much for your e-mail and review of the manuscript (PONE-D-21-21070) that we sent on June 28, 2021. We thank you and the two reviewers for providing constructive comments regarding the improvement of the original manuscript.

Here, we are sending a PDF file of our revised manuscript. All changes have been made in response to your suggestions, and itemized responses to the individual reviewer’s comments are also attached.

Response to academic editor:

Q1. Line 102 - 104: Are these daily occurrences? If not daily, how often does this test performed.

Response: These tests were not performed daily, and we calculated the frequency and revised it in Line 196–197.

Q2. Expand the explanation of Fig. 2. For example: 47 out of 98 patients (48%) blood smear did not show atypical lymphocytes. There are 9 patients with 1% atypical lymphocytes. 12 and 13 patients had 2% and 3% atypical lymphocytes respectively, while 8 and 7 patients had 4 and 5% atypical lymphocytes. Higher fraction (7 & 8%) of atypical lymphocytes was observed in only 2 patients (one for each fraction).

This bags the question whether the fraction of atypical lymphocytes associated with disease severity. The n of this study is probably too small to have an accurate estimate, but discuss may be warranted.

Response: We thank the editor for a valuable suggestion. The explanation was expanded as indicated. We also analyzed the relationship between the fraction and disease severity, and it seems that the fraction/number of atypical lymphocytes is not significantly associated with disease severity. In brief, we assumed that there would be two directions of interaction: severe infection provokes an immune reaction and leads to an increase in atypical lymphocytes; otherwise, an inappropriate immune response results in severe disease and a low number of atypical lymphocytes. We appended a detailed discussion in Lines 281–287.

Q3. Expand explanation is also needed for Fig. 3. For example. The majority of the patients with atypical lymphocytes was detected 5 - 9 days after disease onset and peaked at 9 days

Response: We thank the editor for providing this helpful advice. The explanation is expanded as indicated.

Q4. The quality of the language needs to be improved. Please have a fluent, preferably native, English-language speaker thoroughly copyedit your manuscript for language usage, spelling, and grammar.

Response: The paper has been edited and rewritten by an experienced scientific editor, who has improved the grammar and stylistic expression of the paper.

Response to journal Requirements:

Q1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming.

Response: We checked our manuscript and attached files thoroughly.

Q2. Please remove any funding-related text from the manuscript and let us know how you would like to update your Funding Statement. Currently, your Funding Statement reads as follows:

“This study is funded by Japan Agency for Medical Research and Development.

S. S. received this award.

Grant number is 21jk0210034h0002.

URL of the funder is https://www.amed.go.jp/en/index.html

The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.”

Please include your amended statements within your cover letter; we will change the online submission form on your behalf.

Response: As indicated, funding-related text was removed from the Acknowledgments. Funding Statement did not need to be amended.

Q3. Upon re-submitting your revised manuscript, please upload your study’s minimal underlying data set as either Supporting Information files or to a stable, public repository and include the relevant URLs, DOIs, or accession numbers within your revised cover letter. For a list of acceptable repositories, please see http://journals.plos.org/plosone/s/data-availability#loc-recommended-repositories. Any potentially identifying patient information must be fully anonymized.

Response: We prepared our study's minimal underlying dataset and uploaded it as a Supporting Information file named "S1 Appendix. Clinical data of patients".

Q4. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Response: We checked the reference list of our manuscript, and no cited papers were retracted.

Response to reviewer #1:

Q1. The pictures in Figure 1 could be improved. The atypical lymphocytes can be enlarged with few surrounding red cells.

Response: We thank the reviewer for pointing out how to improve this figure. Figure 1 was revised as indicated.

Q2. A recent study by Gelarden et al (Human Pathology, 2021 Jul; 113:92-103) reported the significance of atypical lymphocytes in bronchoalveolar lavage from COVID-19 patients that can be correlated with clinical outcomes. It would be better that the authors considering discussing their findings with this paper.

Response: We thank you for introducing us to an important paper, which should be mentioned in our manuscript. We read it closely and have changed the text throughout the Discussion in response to its valid points.

Response to reviewer #2:

Q1. In the study, you have showed the atypical lymphocytes as a prognostic factor. Can it be used as a prognostic marker or a predictive marker for prognosis? if so on which day of identifying atypical lymphocyte could suggest pneumonia and related complications among covid-19 patients? This could be then further analysed to provide sensitivity and specificity of using atypical lymphocytes as a prognostic marker.

Response: Although we analyzed atypical lymphocyte dynamics and pneumonia progression, it was hard to clarify the relationship because of the small number of patients who underwent CT scans several times during the follow-up period (40 out of 51 patients did not undergo CT scans after atypical lymphocytes presented in their peripheral blood). Regarding related complications, respiratory failure is the one we could argue on the basis of our data. As calculated by the total number of patients shown in Table 1, the sensitivity and specificity of atypical lymphocytes for oxygen therapy were 0.87 and 0.54, respectively. However, when we further analyzed several clinical indices, as shown in Figure 6, we were not able to show a clear relationship. Considering the results of our investigation, we concluded that atypical lymphocytes correlated with oxygen therapy and relatively favorable prognosis. This idea seems consistent with the presumption that the presence of atypical lymphocytes is a response to viral infection.

Q2. Number/percentage of atypical lymphocyte that could act as a prognostic factor on which day?

Response: We analyzed our data but was not able to detect a significant relationship between the number/percentage of atypical lymphocytes and prognosis. We assumed that this was because there were two meanings of atypical lymphocytes; they indicate both active infection and a lively response of the immune system. We appended a detailed discussion in Lines 281–287. We think the existence of atypical lymphocytes is rather important as a prognostic factor.

Q3. Gap between detection of atypical lymphocyte and pneumonia

Response: If you mean the gap in the dates, we showed these results in Figure 4A. and Lines 178–182.

Q4. statistical relation between oxygen therapy and predictive role of atypical lymphocyte in it.

Response: Please see the response to question #1 above.

Figures and Table:

To improve the manuscript according to the reviewers’ comments, we have changed the figure composition as described below:

Fig. 1 has been revised.

Fig. 5 has been revised.

A new figure has been inserted as Fig 6.

We believe that we have addressed the comments from the academic editor and both reviewers. We look forward to hearing from you regarding our submission. We would be glad to respond to any further questions and comments that you may have. Thank you for your generous consideration.

Sincerely yours,

Jun Sugihara, MD

Attachment

Submitted filename: Responce to Reviewers.doc

Decision Letter 1

Baochuan Lin

20 Oct 2021

PONE-D-21-21070R1Atypical lymphocytes in the peripheral blood of COVID-19 patients: a prognostic factor for the clinical course of COVID-19.PLOS ONE

Dear Dr. Sugihara,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The reviewers agreed that the revised manuscript is scientifically sound, however, there are a few minor issues that still need to be addressed.  Please see specific comments below. Specific comments:1. Line 147 - 148:  The sentence "There were 9 patients with 1% atypical lymphocytes" was repeated, please delete one.2. Line 282 - 283:  "This may be thought to prove otherwise." Not sure what the authors wish to convey, please rephrase for clarification.3. Line 284:  Should "Thought" be "Though"?4. Line 286:  Suggest changing "seemed" to "was".5. Line 296: Suggest changing "occasionally" to "sometimes"6. Line 304:  Delete "to"

Please submit your revised manuscript by Dec 04 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Baochuan Lin, Ph.D.

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors adequately addressed my comments. I have no more concerns. The study would be impactful for the clinical practice on COVID19.

Reviewer #2: Given comments have been addressed by the authors and the manuscript is generally improved. Well written and a timely paper.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Nov 12;16(11):e0259910. doi: 10.1371/journal.pone.0259910.r004

Author response to Decision Letter 1


24 Oct 2021

Response to comments:

1. Line 147 - 148: The sentence "There were 9 patients with 1% atypical lymphocytes" was repeated, please delete one.

Response: We thank the editor for kind advice. The duplicative sentence was deleted as indicated.

2. Line 282 - 283: "This may be thought to prove otherwise." Not sure what the authors wish to convey, please rephrase for clarification.

Response: We thank the editor for pointing out an insufficient sentence in our manuscript. We rephrased this sentence as "This may be thought to prove that the activation of T cells was not related to recovery from COVID-19".

3. Line 284: Should "Thought" be "Though"?

Response: Yes. We thank the editor for kind advice, and correct the word as indicated.

4. Line 286: Suggest changing "seemed" to "was".

Response: We thank the editor for this helpful suggestion, and correct the sentence as indicated.

5. Line 296: Suggest changing "occasionally" to "sometimes"

Response: We thank the editor for this helpful suggestion, and correct the sentence as indicated.

6. Line 304: Delete "to"

Response: We thank the editor for kind advice. The sentence was corrected as indicated.

Attachment

Submitted filename: Responce to Reviewers.doc

Decision Letter 2

Baochuan Lin

29 Oct 2021

Atypical lymphocytes in the peripheral blood of COVID-19 patients: a prognostic factor for the clinical course of COVID-19.

PONE-D-21-21070R2

Dear Dr. Sugihara,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Baochuan Lin, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Baochuan Lin

4 Nov 2021

PONE-D-21-21070R2

Atypical lymphocytes in the peripheral blood of COVID-19 patients: a prognostic factor for the clinical course of COVID-19.

Dear Dr. Sugihara:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Baochuan Lin

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Appendix. Clinical data of patients.

    (XLSX)

    Attachment

    Submitted filename: Responce to Reviewers.doc

    Attachment

    Submitted filename: Responce to Reviewers.doc

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information files.


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