TABLE 1.
Expression levels and putative functions of pneumococcal genes that are sensitive to temperature changes in wild-type D39 at mid-exponential growth phasea
Locus | Function(s) | Fold change at: |
|
---|---|---|---|
34°C | 40°C | ||
SPD_0035-SPD_0036 | Hypothetical protein | 2.32 to 3 | −1.93 to −2.18 |
SPD_0046-SPD_0047 | Bacteriocin synthesis | 9.33 to 9.35 | −7.69 to −7.89 |
SPD_0049-SPD_0056 | Competence development, purine metabolism | 2.58 to 14.81 | −1.95 to −9.74 |
SPD_0059-SPD_0060 | Purine metabolism | 1.92 to 2.79 | |
SPD_0093-SPD_0096 | Hypothetical protein | −2.54 to −3.02 | |
SPD_0113-SPD_0116 | Hypothetical protein | −2.9 to −4.01 | 19.9 to 32.51 |
SPD_0132-SPD_0133 | Hypothetical protein | 6.23 to 52.94 | −5.8 to −31.81 |
SPD_0452-SPD_0453 | Phage integrase protein, restriction/modification subunit | −2.35 to −2.37 | |
SPD_0447-SPD_0448 | MerR family protein, glutamine synthetase | −3.66 to −4.66 | 2.96 to 4.12 |
SPD_0466-SPD_0468 | Bacteriocin synthesis | 2.49 to 7.01 | −2.41 to −6.49 |
SPD_0470-SPD_0474 | Bacteriocin synthesis | 3.38 to 16.54 | −2.02 to −9.59 |
SPD_0701-SPD_0702 | Histidine kinase, response regulator | 1.96 to 2.06 | −2.24 to −2.59 |
SPD_0723-SPD_0724 | Sugar metabolism | −1.99 to −1.9 | |
SPD_0771-SPD_0773 | Sugar metabolism | 1.91 to 2.12 | −2.46 to −3.04 |
SPD_1098-SPD_1099 | ABC transporter | −2.9 to −3.44 | 2.68 to 2.79 |
SPD_1175-SPD_1179 | Hypothetical protein, ABC transporter protein | 1.97 to 2.48 | |
SPD_1380-SPD_1381 | Hypothetical protein, unclassified metabolism | 1.98 to 2.35 | |
SPD_1514-SPD_1516 | ABC transporter protein, hypothetical protein | 2.74 to 3.99 | |
SPD_1527-SPD_1528 | Hypothetical protein, ABC transporter protein | 2.06 to 2.9 | −2.02 to −2.29 |
SPD_1650-SPD_1652 | ABC transporter protein | 2.61 to 4.01 | |
SPD_1682-SPD_1698 | tRNA synthesis | −2.01 to −2.83 | 2.15 to 3.41 |
SPD_1740-SPD_1744 | Competence damage protein, hypothetical protein | 3.1 to 5.84 | −3.22 to −5.37 |
SPD_1830-SPD_1831 | Sugar metabolism, PTS transporter system | 1.97 to 2.21 | |
SPD_1855-SPD_1856 | Hypothetical protein | 3.71 to 6.18 | −2.42 to −5.38 |
SPD_1857-SPD_1862 | Competence development | 7.65 to 37.39 | −5.64 to −20.39 |
SPD_2033-SPD_2035 | Ribosomal surface protein, competence protein, helicase | 2.82 to 3.55 | |
SPD_2063-SPD_2065 | Competence development | 35.18 to 53.65 | −23.95 to −44.92 |
SPD_2068-SPD_2069 | Serine protease, transcriptional regulator SpoJ | 4.4 to 6.38 | −3.5 to −3.73 |
Fold changes are approximately ≥2.0 or less than or equal to −2.0 of each operon. All P values are <0.001.