Fig 5. Rates of insertion site polymorphism and abundance for Gypsy family TEs in 9 genotypes of D. magna from Finland (gold), Germany (green), or Israel (blue).

(A) Mean gain and loss rates (per copy per generation) for each genotype. Gain rates for FB, IA, IB and loss rates for FB, IB are zero. (B) Colored bars indicate the number of genotype-specific polymorphic sites (singletons; x = 1) or population-specific sites (when x = 2 and x = 3), grey bars represent sites where elements are shared across populations (reference genome used for this analysis was FASC). (C) Percent abundance in the genome for each genotype estimated using RepeatMasker.