Table 3. Number of events and rates (plus 95% confidence intervals [CI]) of gain and loss (per copy per generation) for each TE superfamily in which events were observed averaged across all MA lines.
Gains and losses based on whole genome sequence data from Daphnia magna mutation accumulation lines descended from 9 starting genotypes collected from Finland, Germany, and Israel.
| Type | Family/ Superfamily | Gains | Losses | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Number of events | Mean Rate (× 10−5) | Lower CI | Upper CI | Number of events | Mean Rate (×10−5) | Lower CI | Upper CI | ||
| DNA | Academ-1 | 1 | 4.9 | 0.0 | 14.6 | 0 | - | - | - |
| CMC-EnSpm | 0 | - | - | - | 1 | 0.3 | 0.0 | 1.0 | |
| hAT-Ac | 1 | 3.6 | 0.0 | 10.9 | 3 | 5.9 | 0.0 | 14.7 | |
| P | 0 | - | - | - | 1 | 9.0 | 0.0 | 27.1 | |
| PIF-ISL2EU | 1 | 10.1 | 0.0 | 30.3 | 1 | 3.3 | 0.0 | 10.0 | |
| LINE | I | 0 | - | - | - | 1 | 4.4 | 0.0 | 13.1 |
| Penelope | 1 | 11.0 | 0.0 | 32.9 | 0 | - | - | - | |
| LTR | DIRS | 0 | - | - | - | 2 | 10.2 | 0.0 | 27.2 |
| Gypsy | 59 | 7.9 | 3.5 | 13.4 | 11 | 6.1 | 1.0 | 13.1 | |
| Pao | 4 | 0.8 | 0.1 | 1.8 | 8 | 7.2 | 1.2 | 15.6 | |
*Confidence intervals estimated by bootstrapping across MA lines 10000 times.