Table 1. Database fields and descriptions.
| Field | Description |
|---|---|
| `study_id` | Unique study identification number that can be joined with `articles_db` for study metadata |
| `study_country` | Name of country where event occurred. Note that there are some studies that report on events
in multiple countries. |
| `study_iso3c` | Three letter International Organization for Standardization (ISO) code |
| `study_location` | Full study location (including hospital, city, and state if available) |
| `study_location_basis` | Spatial basis of study location (e.g., "hospital, city, state_province_district, country") |
| `residence_location` | Location of patient residence |
| `travel_location` | Patient travel locations, if any reported. Multiple locations are separated by `;`. |
| `drug` | Antimicrobial drug, standardized to the Medical Subject Headings (MeSH) ontology
13
. Drug
combinations are concatenated by `+`. |
| `drug_rank` | Taxonomic classification of drug (i.e., drug name or group) |
| `segment_drug_combo` | TRUE/FALSE resistance is to a combination of drugs |
| `drug_parent_name` | Name of the taxonomic parent of antimicrobial drug, standardized to the Medical Subject
Headings (MeSH) ontology 13 . |
| `bacteria` | Name of resistant bacteria, standardized to NCBI Organismal Classification ontology 14 . |
| `bacteria_rank` | Taxonomic classification of bacteria name (e.g., “species”, “genus”) |
| `bacteria_parent_name` | Name of the taxonomic parent of bacteria, standardized to NCBI Organismal Classification
ontology 14 . |
| `bacteria_parent_rank` | Taxonomic classification of bacteria parent name (e.g., “species”, “genus”) |
| `start_date` | Date that emergence was reported in format of yyyy-mm-dd |
| `end_date` | Date that emergence was resolved, if reported, in format of yyyy-mm-dd |
| `start_date_rank` | Specificity of the start date (i.e., year, month, day) |