Figure 3.

Ancestral Philippine Negritos exhibit higher levels of Denisovan ancestry than Australopapuans

(A) Correlation between Denisovan ancestry and Australasian ancestry. Philippine Negritos fall outside the slope formed by populations with Papuan-related ancestry.

(B and C) Denisovan ancestry in Northern Negritos versus Papuans (B) or Australians (C), before and after accounting for East Asian admixture. Masked or unmasked labels indicate removal or non-removal of East Asian ancestry following RFMix analysis (see STAR Methods).

(D) Extrapolation on the level of Denisovan ancestry in an ancestral “unadmixed” Negrito population by plotting Denisovan ancestry and East-Asian-related ancestry.

(E) Ratio of Denisovan ancestry over Australasian-related ancestry where Philippine Negritos display significantly higher values over near Oceanians or remote Oceanians (Mann-Whitney U test). Thick and thin error bars represent 1 and 1.96 standard error of the estimate, respectively.

See also Figures S2–S5 and Data S1.