Table 1.
Summary of the Genome Assembly and Annotation
| Genome assembly | Estimated genome size | 1.2 Gb |
|---|---|---|
| N50 scaffold length | 53.04 Mb | |
| L50 | 10 | |
| N90 scaffold length | 33.01 Mb | |
| L90 | 20 | |
| Longest scaffold | 68.32 Mb | |
| No. of scaffolds | 463 | |
| BUSCO | Complete | 3930 (80.2%) |
| Duplicate | 1159 | |
| Fragmented | 108 | |
| Missing | 859 | |
| Total BUSCO groups searched | 489 | |
| Transposable elements | LTR-retrotransposons | 25.77% |
| LINEs | 1.13% | |
| DNA-transposons | 3.96% | |
| Rolling circles | 0.13% | |
| Unclassified/unknown | 35.63% | |
| Total | 66.48% | |
| Protein-coding genes | No. of gene models | 39,604 |
| Functionally annotated | 26,288 | |
| Mean gene length | 1,394 bp | |
| Mean no. of exons per gene | 5 | |
| Mean exon length | 256 bp | |
| Mean intron length | 679 bp |