Table 1.
Transcription factors with Z-score greater than 1 based on 3000 cluster proposals
| Gene name | zg | Associated cell type | Citation |
|---|---|---|---|
| Creb3l3 | 34.20 | ||
| Tfeb | 13.37 | ||
| Rhox6 | 10.15 | ||
| Elf5 | 9.45 | Extraembryonic ectoderm | Latos et al. (2015) |
| Gata1 | 8.77 | Primitive erythrocyte | Baron (2013) |
| Pou5f1 | 8.38 | Epiblast, primitive streak | Mulas et al. (2018) |
| Sox17 | 5.61 | Endoderm | Viotti et al. (2014) |
| Nr0b1 | 5.58 | ||
| Hoxb1 | 4.54 | Mesoderm | Carapuço et al. (2005) |
| Foxf1 | 3.36 | Lateral plate mesoderm | Mahlapuu et al. (2001) |
| Gata2 | 3.27 | Extraembryonic mesoderm | Silver and Palis (1997) |
| Prdm6 | 3.12 | ||
| Bcl11a | 2.99 | ||
| Foxa2 | 2.70 | Anterior visceral endoderm, anterior primitive streak | Perea-Gomez et al. (2001) and Arnold et al. (2008) |
| Gsc | 2.67 | Anterior primitive streak | Lewis et al. (2007) |
| Hand1 | 2.57 | Posterior mesoderm, lateral plate mesoderm | Riley et al. (1998) |
| Ascl2 | 2.52 | Ectoplacental cone | Simmons and Cross (2005) |
| Mesp1 | 2.46 | Posterior primitive streak | Arnold and Robertson (2009) |
| Hoxa1 | 2.44 | Mesoderm | Carapuço et al. (2005) |
| Nanog | 2.24 | Epiblast | Mulas et al. (2018) |
| Zfp42 | 2.14 | Extraembryonic ectoderm | Pelton et al. (2002) |
| Cdx1 | 2.12 | Paraxial mesoderm | van den Akker et al. (2002) |
| Runx1 | 1.82 | ||
| Hoxb2 | 1.73 | Mesoderm | Carapuço et al. (2005) |
| Id2 | 1.51 | Extraembryonic ectoderm | Jen et al. (1997) |
| Tbx3 | 1.31 | ||
| Pitx2 | 1.20 |
Note: For each transcription factor, we list the associated cell type from early mouse gastrulation.