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(A) Genome coverage of the 181 primary samples that returned sequences using the AmpliSeq method, compared to the CT value obtained with the CDC 2019-nCoV real-time RT-PCR diagnostic panel as an indication of viral load. The percentage of bases with at least 20× coverage was reported by the CoverageAnalysis plug-in. (B) Genome coverage of the 83 samples that were processed with both the AmpliSeq Ion Torrent and Illumina MiSeq ARTIC methods.
