Figure 5.

Speed and memory usage comparison

Speed and memory usage comparison on six pairs of simulation data with increasing number of cells (5000, 10,000, 15,000, 20,000, 25,000, and 50,000). True assay (without dropouts) was used as the reference and the raw assay (with dropout mask) was used as the query. Both reference and query datasets contain the same number of cells. Color depicts different annotation methods. A. Natural log of runtime in second (y-axis) vs. number of cells (x-axis) over five repetitions at each data point. B. Natural log of peak memory usage in GB (y-axis) vs. number of cells (x-axis) over five repetitions at each data point. Results are shown as mean ± SD. GB, gigabyte.