Table 1.

Differentially expressed genes in tissues from ducks infected with VN1203 or BC500.

	Total DEGs (FDR < 0.05)	Total DEGs (FC >2 and FC <-2)	Upregulated (FC >2)	Downregulated (FC <-2)
VN1203 - Lung 1 dpi	4204	1804	1063	741
VN1203 - Lung 2 dpi	2808	1235	542	693
VN1203 - Lung 3 dpi	4719	1939	772	1167
VN1203 - Spleen 1 dpi	4894	2738	1054	1684
VN1203 - Spleen 2 dpi	3572	1575	698	877
VN1203 - Spleen 3 dpi	4465	2121	943	1178
BC500 - Lung 1 dpi	53	51	50	1
BC500 - Lung 2 dpi	110	93	82	11
BC500 - Lung 3 dpi	10	10	10	0
BC500 - Spleen 1 dpi	84	75	72	3
BC500 - Spleen 2 dpi	320	217	202	15
BC500 - Spleen 3 dpi	75	65	55	10
BC500 - Intestine 1 dpi	73	64	55	9
BC500 - Intestine 2 dpi	3732	1583	551	1032
BC500 - Intestine 3 dpi	401	187	106	81

Total DEGs were sorted by false discovery rate (FDR) <0.05. Genes were considered upregulated if the log2(FC)>1 and downregulated if the log2(FC)<-1.