Table 2.
Counts of alternatively spliced (AS) transcripts in tissues of ducks infected with VN1203 or BC500.
| Total AS Genes (Simmes FDR < 0.05) | |
|---|---|
| VN1203 - Lung 1 dpi | 456 |
| VN1203 - Lung 2 dpi | 50 |
| VN1203 - Lung 3 dpi | 267 |
| VN1203 - Spleen 1 dpi | 70 |
| VN1203 - Spleen 2 dpi | 57 |
| VN1203 - Spleen 3 dpi | 106 |
| BC500 - Lung 1 dpi | 7 |
| BC500 - Lung 2 dpi | 14 |
| BC500 - Lung 3 dpi | 7 |
| BC500 - Spleen 1 dpi | 14 |
| BC500 - Spleen 2 dpi | 15 |
| BC500 - Spleen 3 dpi | 21 |
| BC500 - Intestine 1 dpi | 7 |
| BC500 - Intestine 2 dpi | 37 |
| BC500 - Intestine 3 dpi | 9 |
Individual exon counts in VN1203 or BC500 infection were compared to controls. Alternative splicing events were considered significant (FDR<0.05) when analyzed using EdgeR diffSpliceDGE program, using the “Simmes” method.