Table 1. Term and site weights and reverse orientation penalty of the Paladin model.
Van der Waals | 0.1 | Site -2 | 0.5 |
Electrostatic | 0.6 | Site -1 | 0.5 |
Backbone Strain | 0 | Site 0 | 1.0 |
Backbone Conformational Propensity | 0 | Site +1 | 0.2 |
Side-chain Conformational Propensity | 0 | Site +2 | 0.1 |
Desolvation FE of Substrate side chain | 1.0 | ||
Desolvation FE of βSBD site | 0.4 | Reverse penalty (kcal/mol) | 0 |