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. 2021 Nov 20;52:141. doi: 10.1186/s13567-021-01011-y

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Chlamydiaceae qPCR results of group GG and -G. In A individual results of the Chlamydiacea qPCR of the cloacal swabs per timepoint are depicted in a heatmap. The darker the colour, the lower the Ct value as shown in the colour scale at the right side. Ct values > 40 or no qPCR signal are shown as Ct 41. B shows the mean Ct value of cloacal swabs in time per group (of the Chlamydiaceae qPCR). The error bar indicates the SD. On the Y-axis the cycle treshold (Ct) value is depicted. The Y-axis has been rotated and Ct values > 40 or no qPCR signal are shown as Ct 41. In C the Chlamydiacea qPCR results of tissue samples are shown. The Y-axis has been rotated and Ct values > 40 or no qPCR signal are shown as Ct 41. The bar indicates the median.