Table 1.
Number of differentially expressed genes (DEGs) identified at each of the three time points
| GalaRvi6 versus Gala | 60 AU versus Conference | |||||||
|---|---|---|---|---|---|---|---|---|
| 0 hpi | 8 hpi | 24 hpi | 72 hpi | 0 hpi | 8 hpi | 24 hpi | 72 hpi | |
| Total number of DEGs* | 173 | 1799 | 823 | 539 | 1115 | 2415 | 922 | 273 |
| DEGs in % of all genes on the microarray** | 0.55 | 5.75 | 2.63 | 1.72 | 2.54 | 5.50 | 2.10 | 0.62 |
| % of upregulated DEGs | 19.1 | 56.8 | 60.9 | 30.4 | 46.2 | 76.3 | 81.5 | 49.1 |
| % of downregulated DEGs | 80.9 | 43.2 | 39.1 | 69.6 | 53.8 | 23.7 | 18.5 | 50.9 |
| % of DEGs without TAIR name | 2.89 | 4.84 | 6.80 | 5.19 | 13.9 | 14.0 | 10.1 | 14.3 |
*: DEGs numbers were calculated using the p-adj values ≤0.01 as selection threshold
**: 66792 genes on the apple AriANE 2.0 microarray, 43,906 genes on the Pyrus v1.0 microarray