Table 2.2.
Primers used in this study.
| Organism | Acc no | CutD primers | Tm | Sizebp | Ref |
|---|---|---|---|---|---|
| Klebsiella pneumoniae subsp. rhinoscleromatis | NZ_GG703531.1 | EK-DF: AGTCCTGCATGATGATCTCCATC EK -DR........: AACTGCGGCGACTGCGTCA '' '' '' '' '' '' |
58 | 202 | This study |
| Klebsiella variicola | NZ_CP010523.1 | ||||
| Klebsiella oxytoca | NZ_KQ088036.1/ NZ_CP011597.1 | ||||
| Klebsiella pneumoniae subsp. pneumoniae | |||||
| Escherichia fergusonii | NC_011740.1 | ||||
| Escherichia coli | CP012631.1 | ||||
| Clostridium sporogenes | NZ_CP011663.1 | Cl-DF: CCACCTAATGTAACTCCACC Cl-DR........: GGAGATGGAATAAGAACTT |
359 | This study | |
| Clostridium tetani | NZ_JRGJ01000020.1 | 58 | |||
| Providencia rustigianii | NZ_GG703818.1 | PvD-F: ACCAAGCTGGTGATAAGGTA PvD-R: GACATTATGGGAAAAGATGTCAC '' '' |
54 | 489 | This study |
| Providencia alcalifaciens | NZ_ABXW01000042.1 | ||||
| Providencia rettgeri | |||||
| Proteus mirabilis | EEI47332.1 | Pr-DF: AGGCTGTAATATCCGCTGCC Pr-DR........: TACGGCGGACATTCTCATTAC '' |
54 | 554 | This study |
| Proteus penneri | EEG87332.1 | ||||
| Anaerococcus hydrogenalis | EEB36264.1 | Ah-DF: CAACGTCCATGATGGTCCAG Ah-DR........: AATTGGCATCCTTACCCTAACT |
56 | 457 637 |
This study This study |
| Anaerococcus tetradius | EEI82585.1 | '' |
|||
| Anaerococcus vaginalis | EEU12077.1 | Ah-DF: CAACGTCCATGATGGTCCAG Ah-DR........: AATTGGCATTCTTACCCTAACT |
56 | ||
| Hungatella hathewayi | ENY95336.1 | HD-F: TATGCTAAAGGGGATCAACG HD-R: GTGACAGGGAACTGATACTC |
56 | 237 | This study |
| Yokenella regensburgi | EHM44497.1 | Y-DF: AATGATGATCAACACCGCCG Y-DR........: TCGTTGAAGCCGCGAATAAG |
58 | 231 | This study |
| Vibrio furnissii | ADT85553.1 | V-DF: CCGAAATGAAGGGACGTATT V-DR........: CATGACTCACCATGACTTGA |
54 | 159 | This study |
| Olsenella uli | ADK67431.1 | Oul-DF: TTGAGAACGGATACAACGTC Oul-DR........: CATCCTTGATCTCGTAGTCG |
56 | 201 | This study |