TABLE 1.
Summary of HIV-1JR-FL conformational statesa
Env | Source | Treatment | Occupancy of conformational state (%) |
Reference | ||
---|---|---|---|---|---|---|
State 1 | State 2 | State 3 | ||||
Wild-type HIV-1JR-FL Env | Virion | None | 50 | 26 | 24 | 42, 79 |
BMS-806 | 55 | 18 | 27 | |||
HIV-1JR-FL Env(−) | Virion | None | 25 | 42 | 33 | 79 |
BMS-806 | 40 | 32 | 28 | |||
Purified from cell membranes | BMS-806 + BS3 crosslinking |
26 | 37 | 37 | This study |
The relative occupancies (%) of conformational states for the indicated sources and treatments of HIV-1 Envs were derived from smFRET histograms. The FRET histograms were compiled from individual smFRET traces. The state distributions in the FRET histograms were fitted to the sum of three Gaussian distributions by hidden Markov modeling, and the occupancy of each state was obtained from the area under each Gaussian curve.