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. 2021 Nov 23;12:6802. doi: 10.1038/s41467-021-27096-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a Estimation of effective population size (N_e) by Skygrid analysis for Cluster A (red), C (green) and D (blue) sequences. The logarithmic effective number of infections viral generation time (t) representing effective transmissions is plotted over time. 95% HPD intervals are plotted in lighter colours. Vertical dashed line is the mean TMRCA. b Estimation of reproductive number (R_e) by BDSKY analysis of Cluster A (red), C (green) and D (blue) sequences. The shaded portion is the 95% HPD interval, and the solid line is the posterior median. Vertical dashed line is the mean TMRCA.