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. 2021 Nov 24;6(12):1549–1560. doi: 10.1038/s41564-021-01000-z

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 7 — A – Independent Bayesian Skyline plots for Nichols- and SS14- lineages. B – Independent lineages through time plot for Nichols- and SS14-lineages. Skyline analysis indicates expansion of SS14-lineage after 2000 coincided with a decline of Nichols-lineage. However, analysis of lineage accumulation through time shows that both SS14 and Nichols continued to expand after 2000; whilst this is visible as a steep slope from 2000 in SS14, rapid expansion for Nichols occurred after 2010.