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. 2021 Nov 24;6(12):1549–1560. doi: 10.1038/s41564-021-01000-z

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 10 — A- Whole genome phylogeny showing distribution of macrolide resistance conferring SNPs (A2058G and A2059G). B- Distribution of macrolide resistance SNPs by sublineage, indicating number of samples per sublineage, and sublineage type. Note that while the common A2058G mutation was found in six sublineages (both Nichols- and SS14-lineages), we also found the less common A2059G in both SS14-lineage (sublineages 1, 2) and Nichols-lineage (sublineage 6).