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. 2021 Nov 24;6(12):1549–1560. doi: 10.1038/s41564-021-01000-z

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 2 — Recombination masked WGS phylogeny, showing the SS14-lineage and sublineages. The low diversity globally distributed sublineage 1 has been collapsed to enable visualization of the remaining sublineages. Tip points are coloured by sublineage, and coloured strips show sublineage and country. Blue triangle indicates collapsed Nichols-lineage, pink triangle indicates collapsed sublineage 1. Two samples close to the root of the common SS14-lineage clades were clustered as sublineage 1, and are shown. Note that sublineage 6 diverges from a node close to the root of TPA, and appears on the SS14 side in this midpoint rooted tree.