Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Nov 24;6(12):1549–1560. doi: 10.1038/s41564-021-01000-z

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Extended Data Fig. 5 — A – Whole genome phylogeny showing distribution of samples sequenced directly from clinical sample or rabbit-passaged. B – Distribution of samples sequenced directly from clinical sample and rabbit-passaged samples according to sublineage, showing proportion (bar) and exact count (number). For both A and B, plots are coloured according to being directly sequenced from clinical samples (Black) or after rabbit passage (grey). Samples passaged in rabbits are distributed throughout the global TPA phylogeny, and present in 9/17 sublineages. Older samples from before 2000 were isolated via rabbit passage, and dominate extinct clusters, as well as clustering close to the most recent common ancestor of contemporary sublineages such as SS14 sublineage 1.