Table 1.
Association peaks of candidate genes within cis-regulated eQTLs in the cochlea.
| Gene | RefSeq | Chr | txStart (bp)a | txEnd (bp)b | Local eQTL Pc |
|---|---|---|---|---|---|
| Xkr9 | ILMN_3159558 | 1 | 13668771 | 13701723 | 1.79E-01 |
| Eya1 | ILMN_2638487 | 1 | 14168954 | 14310200 | 6.26E-03 |
| Msc | ILMN_2769777 | 1 | 14753346 | 14755966 | 2.50E-04 |
| Mapkbp1 | ILMN_2873793 | 2 | 119972699 | 120027408 | 3.77E-02 |
| Pla2g4d | ILMN_3156124 | 2 | 120265595 | 120289197 | 4.79E-02 |
| Ltk | ILMN_1219860 | 2 | 119751320 | 119760431 | 6.37E-02 |
| Rpap1 | ILMN_2602151 | 2 | 119763304 | 119787537 | 1.65E-02 |
| Pla2g4f | ILMN_2727722 | 2 | 120299957 | 120314165 | 1.03E-03 |
| Vps39 | ILMN_3129752 | 2 | 120316461 | 120353137 | 1.52E-02 |
| Tmem87a | ILMN_2969172 | 2 | 120355312 | 120404113 | 1.57E-02 |
| Ganc | ILMN_2791355 | 2 | 120403896 | 120461700 | 1.85E-01 |
| Zfp106 | ILMN_2482427 | 2 | 120506820 | 120563843 | 2.30E-01 |
| Tgm5 | ILMN_2690147 | 2 | 121046111 | 121085841 | 3.14E-01 |
| Ccndbp1 | ILMN_1240178 | 2 | 121008403 | 121016904 | 3.18E-01 |
| Adal | ILMN_1242772 | 2 | 121140428 | 121156680 | 3.35E-01 |
| Trp53bp1 | ILMN_1243753 | 2 | 121193281 | 121271407 | 3.80E-02 |
| Tubgcp4 | ILMN_1257622 | 2 | 121170654 | 121198770 | 3.82E-01 |
| Adcy8 | ILMN_2607127 | 15 | 64699042 | 64922296 | 3.79E-01 |
| Olig1 | ILMN_2760105 | 16 | 91269769 | 91271939 | 2.14E-06 |
| Ifnar2 | ILMN_2598703 | 16 | 91485238 | 91507441 | 6.66E-07 |
| Gpr89 | ILMN_2953098 | 3 | 96868281 | 96905346 | 3.07E-02 |
| Cd160 | ILMN_2707181 | 3 | 96798763 | 96829351 | 1.49E-02 |
| Fmo5 | ILMN_1230890 | 3 | 97628804 | 97655282 | 3.52E-01 |
| Chd1l | ILMN_2986172 | 3 | 97560742 | 97610203 | 1.57E-02 |
| Pde4dip | ILMN_3064283 | 3 | 97689824 | 97888707 | 4.00E-01 |
| Ankrd34a | ILMN_3020599 | 3 | 96596636 | 96599775 | 6.43E-02 |
| Rbm8a | ILMN_1252850 | 3 | 96629928 | 96633779 | 6.80E-02 |
| Pex11b | ILMN_1258372 | 3 | 96635376 | 96653101 | 1.64E-01 |
| Sv2a | ILMN_1213495 | 3 | 96181151 | 96195521 | 3.01E-01 |
| Mtmr11 | ILMN_2676662 | 3 | 96162004 | 96171718 | 3.77E-01 |
| Hist2h2ac | ILMN_1218380 | 3 | 96220361 | 96220880 | 4.10E-01 |
| Hist2h2be | ILMN_1231066 | 3 | 96221121 | 96223738 | 9.24E-03 |
| Prpf3 | ILMN_2941430 | 3 | 95830124 | 95855885 | 5.17E-02 |
| BC028528 | ILMN_2656422 | 3 | 95883954 | 95892005 | 2.21E-01 |
| Aph1a | ILMN_1232821 | 3 | 95893969 | 95898288 | 3.09E-02 |
a
txStart, location of transcription (NCBI Build 37 genome assembly) start.
b
txEnd, location of transcription (NCBI Build 37 genome assembly) end.
c
Statistically significant p-value ≤ E-06 (Bonferroni corrected for the number of probes tested).