Table 4.
Assembly and annotation statistics of the PM4 and PM7 strains of Pasteurella multocida.
| Features | PM4 | PM7 |
|---|---|---|
| NCBI Prokaryotic Genome Annotation Pipeline | ||
| (GeneMarkS-2+) | ||
| Genes (total) | 2.318 | 2.319 |
| CDSs (total) | 2.260 | 2.261 |
| Genes (coding) | 2.217 | 2.221 |
| Genes (RNA) | 58 | 58 |
| Complete rRNAs (5S, 16S, 23S) | 2, 1, 1 | 2, 1, 1 |
| tRNAs | 50 | 50 |
| ncRNAs | 4 | 4 |
| Pseudo Genes (total) | 43 | 40 |
| RASTtk v2.0 | ||
| Number of Coding Sequences (CDS) | 2.323 | 2.332 |
| Gene in subsystem | ||
| Non-hypothetical | 814 | 817 |
| Hypothetical | 39 | 39 |
| Gene not in subsystem | ||
| Non-hypothetical | 992 | 993 |
| Hypothetical | 478 | 483 |
| Number of RNAs | 56 | 56 |
| Prokka v1.12 | ||
| Number of genes predicted | 2.313 | 2.313 |
| Number of protein-coding genes | 2.258 | 2.258 |
| Number of genes with non-hypothetical function | 1.684 | 1.682 |
| Number of genes with EC-number | 890 | 890 |
| Number of genes with seed subsystem ontology | 745 | 745 |
| tRNAscan-SE v. 2.0 | ||
| Total tRNAs | 52 | 52 |
| ARAGORN v1.2.38 | ||
| Total tRNA genes | 50 | 50 |
| Total tmRNA | 1 | 1 |