Fig. 3.

Comparison between colonic lavage and biopsy samples. a Procrustes visualizations of non-metric multidimensional scaling plots compared at the phylum and family levels for stool vs. lavage. b Cladogram generated by LEfSe indicating differences in taxa between lavage group and stool group. Each successive circle represents a phylogenetic level (phylum, class, order, family, genus). Regions in red indicate taxa enriched in lavage group while regions in green indicate taxa enriched in stool group. Different taxa (at family and order level) are listed on the right side of the cladogram