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. 2021 Oct 29;10(11):1115. doi: 10.3390/biology10111115

Table 2.

Top 20 one-target genes obtained using the IACT framework. SPTLC1/2/3 is a complex of serine palmitoyltransferase constructed by SPTLC1, SPTLC2, and SPTLC3. Other genes each encode for a single enzyme, as shown in the abbreviations section. The symbol (–) denotes that data are unavailable.

Gene ηCV ηDV ηSE§ N/D nDrugs Ave. AE Pathway
HMGCR 0.719 0.675 0.637 50/51 20 8.77 Cholesterol Biosynthesis, Statin Pathway, Mevalonate Pathway
MVK 0.719 0.669 0.636 50/51 1 Mevalonate Pathway, Regulation of Cholesterol Biosynthesis By SREBP
MVD 0.719 0.669 0.636 48/51 Mevalonate Pathway, Regulation of Cholesterol Biosynthesis By SREBP
PMVK 0.719 0.669 0.636 23/51 Mevalonate Pathway, Regulation of Cholesterol Biosynthesis By SREBP
SQLE 0.719 0.672 0.637 3/51 4 6.73 Cholesterol Biosynthesis III, Statin Pathway
FDFT1 0.719 0.674 0.637 8/51 1 Cholesterol Biosynthesis III, Statin Pathway
EBP 0.719 0.674 0.637 0/51 1 8.94 Cholesterol Biosynthesis III
LSS 0.719 0.672 0.637 0/51 2 Cholesterol Biosynthesis III
NSDHL 0.719 0.674 0.637 0/51 1 Cholesterol Biosynthesis III
SPTLC1/2/3 0.719 0.670 0.636 37/51 2 Sphingolipid Metabolism
KDSR 0.719 0.670 0.636 6/51 Sphingolipid Metabolism
CRLS1 0.719 0.669 0.636 38/51 Glycerophospholipid Biosynthesis
PGS1 0.719 0.448 0.492 50/51 Glycerophospholipid Biosynthesis
PTDSS1 1.0 0.303 0.477 8/51 1 Glycerophospholipid Biosynthesis
ADSL 0.719 0.669 0.636 49/51 Metabolism of Nucleotides, Purine Metabolism
ADSS2 0.719 0.669 0.636 37/51 3 Metabolism of Nucleotides, Purine Metabolism
UMPS 0.719 0.655 0.632 29/51 2 9.82 Metabolism of Nucleotides, Pyrimidine Biosynthesis
DHODH 0.719 0.448 0.492 19/51 26 10.04 Metabolism of Nucleotides, Pyrimidine Biosynthesis
CAD 0.719 0.669 0.636 27/51 3 8.9 Metabolism of Nucleotides, Pyrimidine Biosynthesis
RPIA 0.719 0.675 0.637 6/51 1 Pentose Phosphate Pathway

Cell viability grade as evaluated from cancer cell treatment and the perturbations of normal cells due to treatment; ‡ Metabolic deviation grade indicating the perturbance of the cellular flux patterns as measured by dissimilarity to the cancer template and similarity to the basal template; § Side effect grade. A higher ηSE indicates fewer predicted side effects; The cell death number (N) divided by the total number of colon cancer cells (D) used for the test from DepMap; The number of drugs retrieved from DrugBank that modulate each gene; Average grade of adverse events for drugs acting on an identified gene; Accessed from GeneCards.